Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32284
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    30   0.27 
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    28   0.82 
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   4.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.4  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    26   4.4  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +1

Query: 97   DYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRNEPDT 276
            D+    DII  + +  L      F+L+Q    +T  +  L P I H ++ ++  ++E +T
Sbjct: 1382 DHQSFKDIIVHVANLELYYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSE-NT 1440

Query: 277  PGEINYKYVLEHL 315
            P  +N+   ++HL
Sbjct: 1441 PLILNFMVAIQHL 1453


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 27  KRREYPRTNRTNQPVFYAQIFLE*LWKSCGHY*TY*QSKFEIDV 158
           K   Y  + R  Q V    ++   LWK+ GH+  Y ++ F  D+
Sbjct: 326 KYMRYQYSKRGYQEVITPNMYNVNLWKTSGHWNNYSENMFSFDI 369


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 106 RAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYI 228
           R + I++ I  PN+  ++  FH    + D TH +  LL Y+
Sbjct: 65  RELQIMRAISHPNIIKLIAFFHTHNPSKDETH-LCLLLEYM 104


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 392  IQVKPSFVFPMALYSSPTHSSYPLLAKCSRTY 297
            + +KP ++F + L S  T  S+ L ++C R +
Sbjct: 1259 LYLKPQYLFSVQLASDFTEDSFTLTSECLRYF 1290


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 91  LSDYGRAVD-IIKRIDSPNLRLMLDIFHLQQIAGDITHNI 207
           +SD+   +D  +KRI  P +R  LD  HL+ IA   T  I
Sbjct: 96  MSDFAIGLDPSLKRI-LPEIRFRLDFQHLKSIAKGATSTI 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,567
Number of Sequences: 5004
Number of extensions: 46503
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)