Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32284
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604...    28   5.9  
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     28   5.9  
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76...    27   7.8  
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238...    27   7.8  
04_02_0006 + 8455219-8457469,8457560-8457924                           27   7.8  

>04_03_0199 -
           12559351-12559433,12559693-12559827,12560260-12560437,
           12560848-12561389,12561398-12564827
          Length = 1455

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 166 FHLQQIAGDITHN-ITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSG 327
           FHL  +   +TH  +   L    H+Q+  + +   P  P +IN    L HLA+ G
Sbjct: 537 FHL--LLERVTHEALPHALSKCYHLQVLDIGSYGSPLIPDDINNLVSLRHLAQKG 589


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 213 FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHS-SSIITQEIFGHRILVDW 58
           F  I SN  +  +   N ++++ +WT N    VH+  S++T +  G  +L D+
Sbjct: 53  FLTIYSNAFAFSIWYTNSKNKTVVWTANRGRPVHARRSVVTLQKDGAMVLKDY 105


>09_01_0042 +
           764349-764763,764853-764902,765096-765172,766179-766236,
           767481-767607,768665-768769,768842-769424,769470-769775,
           770048-770139,770391-770440
          Length = 620

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 413 FDFVISF*ILIEYIHFITILLYYSICY 493
           F FV+S  +++++++   ILL+ +ICY
Sbjct: 477 FCFVLSTSLMLQWLYSFQILLHVTICY 503


>06_01_0329 +
           2383305-2384057,2385423-2385469,2386383-2386815,
           2386852-2387034,2388388-2389044
          Length = 690

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 7/28 (25%), Positives = 19/28 (67%)
 Frame = +1

Query: 172 LQQIAGDITHNITKLLPYIGHVQIAQVP 255
           ++++AGD+ HN+   +  +  +++ Q+P
Sbjct: 130 MRRLAGDVEHNVEAFMELVPELEVEQLP 157


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = +3

Query: 9   ICCRRPKRREYPRT---NRTNQPVFYAQIFLE*LWKSCGH 119
           +C   PKRRE P T   N T + V Y  I     W S  H
Sbjct: 533 LCSSNPKRREVPTTPINNETLKKVSYGDILKATNWFSSVH 572


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,635,136
Number of Sequences: 37544
Number of extensions: 260550
Number of successful extensions: 615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)