Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32282
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 40 2e-04
SPAC227.04 |||autophagy C terminal domain family protein|Schizos... 29 0.21
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 29 0.28
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 27 1.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 2.0
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 26 2.6
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 2.6
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 25 3.5
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 3.5
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 25 3.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 4.6
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 6.1
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 6.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 6.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 24 8.0
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 24 8.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 24 8.0
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 39.5 bits (88), Expect = 2e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Frame = +3
Query: 156 RAQQLVDAYRTYGHLKATIDNVDYRNESRNIKELHYSRYGL---DPEETVDTG--LLYGY 320
+ Q LV AY++ GH A +D + EL YG D T+ G +L +
Sbjct: 127 KVQLLVRAYQSRGHHLAKLDPLGINVNHNRPSELTLEHYGFTESDLNRTIHLGPGILPNF 186
Query: 321 --SGXNS--IKSLFDELVKIYCGHISYEFTHLES 410
+G + ++ + + KIYCG + EFTH+ S
Sbjct: 187 REAGRKTMTLREIVETCEKIYCGSFAVEFTHISS 220
>SPAC227.04 |||autophagy C terminal domain family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 29.5 bits (63), Expect = 0.21
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -2
Query: 193 PYVR*ASTSCCARQFLYLFDIMSSGISYSSAIVGRCPKTPAPEWY----RTRSY 44
PY + Q L + S ++Y + +G CP T WY RTR Y
Sbjct: 84 PYANGSDPLTKMEQIFELLEGSSQNLAYDALAIGDCPGTVGIAWYIHPCRTRDY 137
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 29.1 bits (62), Expect = 0.28
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 165 VALGSSYISLILCPLESRIHLQSSVDARRLPRP 67
+ G+S + LC L + H +S+DA LP P
Sbjct: 179 IGFGASLLDKYLCDLRTSYHKHNSLDALPLPTP 211
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 231 NESRNIKELHYSRYGLDPEETVDTGLLYGYSGXNSIKSL 347
+ESR E H R+G+ ++ ++ GYS ++IKS+
Sbjct: 138 DESRLRAEQHKRRFGVHSQQPSNSIQTIGYSNSDAIKSI 176
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +3
Query: 201 KATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGXNSIKSLFDELVK 365
+A+ N+ +E+ + +LH S++GL E + + + ++K L L+K
Sbjct: 246 EASRRNLTSSDETNSFSKLHQSQFGLKEESSHEPRSSQHWKNEVAMKDLLKNLIK 300
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 2.6
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Frame = +3
Query: 93 PTIADEYEIPEDIISKRYKNC-----------RAQQLVD-AYRTYGHLKATIDNVDYRNE 236
P D+ E+ D+I + +NC + LVD A + G + ++N+ Y+
Sbjct: 75 PEERDDAEVTRDLIEREGRNCWIWEGKLDKSDNCRDLVDFALKKLGWIDVLVNNIAYQQV 134
Query: 237 SRNIKELHYSRYGL 278
+++I+++ ++ L
Sbjct: 135 AQSIEDIDDEQWDL 148
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 2.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 102 ADEYEIPEDIISKRYK--NCRAQQLVDAYRTYGHLKATIDNVDYRNESRNIKELHYSRYG 275
A++ E I ++Y+ R +L DA R LKA ++ + RN+ +L Y YG
Sbjct: 452 AEQVEEETRPIREKYELEKSRGSELQDAKRRLDELKAKAEDAERRNDFTLAADLKY--YG 509
Query: 276 L 278
+
Sbjct: 510 I 510
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 3.5
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 147 KNCRAQQLVDAYRTYGHLKATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSG 326
K+CR Y YG+ T NV Y + +E+ SRY E+ L S
Sbjct: 45 KHCRQYCTKPGYDIYGNSVQTPSNVPYYSCLMCKREIAASRYAAHLEKCKGRSL----SN 100
Query: 327 XNSIKSLFDE 356
S +LF++
Sbjct: 101 ATSYSTLFED 110
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 3.5
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 198 LKATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGXNSIKSLFDELVKI 368
LK T+DNVD+ S+ +++L L+ E + T + G ++ S D ++ I
Sbjct: 135 LKETLDNVDFDARSKILQDLR-----LEYAEILLTKFNFEKKGYQNLSSALDTILHI 186
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.4 bits (53), Expect = 3.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 150 NCRAQQLVDAYRTYGHLKATIDNVDYRNESRNIK 251
NCR +V + H + T + + Y N ++NIK
Sbjct: 358 NCRTVMIVCVSPSSVHYEETHNTLKYANRAKNIK 391
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 4.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 235 KAGISKSCIIRGTVSIPKKQWTRDSC 312
+A SC+ SIPK+ W D+C
Sbjct: 290 EAAYHTSCLDPPLTSIPKEDWYCDAC 315
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 240 RNIKELHYSRYGLD 281
+N+K+ HY RY LD
Sbjct: 323 QNLKDFHYKRYKLD 336
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 201 LDVRTYGKRRPAVALGSS 148
LD YG+RRP++ G+S
Sbjct: 31 LDTNNYGQRRPSLLSGTS 48
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = -2
Query: 133 IMSSGISYSSAIVGRCPKTPAPEWYRTR 50
+++ G + RCP+ +WY TR
Sbjct: 688 LLAVGTEAGKIFIWRCPRENLTKWYPTR 715
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 24.2 bits (50), Expect = 8.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +3
Query: 27 CKVDRLYDRVLYHSGAGVFGHRPTIADEYEI----PEDIISKRYKNCRAQQLVD 176
C +DR D L HSG + ++++ ++I PE + R NC A LVD
Sbjct: 787 CNLDRFLDSKLDHSGWSLIS--KSLSEVFKIINVAPE--LRTRAANCLANILVD 836
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 24.2 bits (50), Expect = 8.0
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 123 EDIISKRYKNCRAQQLVDAYRTYGHLKATIDNVDYRNESRNIKELHYSRYGL 278
+DII K + + AY T T + DYRN + + E + GL
Sbjct: 8 QDIIKKPKLDQHRSRCHGAYFTCIDCNTTFERTDYRNHTSCMTEAQRYQKGL 59
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 405 PNA*THTIYARNIF*PVHRI 346
PNA ++IYARN+F V ++
Sbjct: 658 PNAGLNSIYARNLFNTVEQL 677
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,152
Number of Sequences: 5004
Number of extensions: 32802
Number of successful extensions: 126
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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