Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32279
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 28 0.92
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 1.2
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 27 2.1
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 2.1
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 2.8
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 3.7
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 4.9
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 4.9
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 25 6.5
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 25 6.5
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 6.5
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 8.5
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 27.9 bits (59), Expect = 0.92
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 391 LNLSRCKIDVIENASFKELQEMRVLDLSYNKLT 489
L S CK+ I F LQ + LDLS N+LT
Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELT 369
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 146 FTMRSSDEEKYEDSHSPTHFFKNQYIGNIYRSCV 45
F +R++DEE+Y D+ H + N I N+ RS V
Sbjct: 47 FPIRNTDEERYLDTKEIHHTWDNT-IKNVVRSIV 79
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 194 DDPAVTLALAPRCCNVFTMRSSDEEKYEDS--HSPTHFFKNQYIGNIYRSCVI 42
DDP+ L PR + +R+ +KY S T F K +Y SCVI
Sbjct: 227 DDPSTARFLNPREKELMKIRAEQRQKYMGSPNFDWTQFRKAFKDPKMYMSCVI 279
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 378 VNRDTELVSLQDRCHRKRQLQRATGDACSRLKLQ*VD 488
+N + EL +++D K+QLQR RL + +D
Sbjct: 118 INEEPELKAIEDTEESKKQLQREESKEADRLLQERID 154
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.2 bits (55), Expect = 2.8
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +1
Query: 304 LADFKPKIVDLSENSFTNVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNK 483
L++ P I +L+ + + + I +L+ + + SF L ++ LD+SYN+
Sbjct: 621 LSELCPSIEELTLEG-NEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQ 679
Query: 484 L 486
L
Sbjct: 680 L 680
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 334 LSENSFTNVTLM-ADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLT 489
LS N+F + L + L L+ ++ + + +RVLDLS+N ++
Sbjct: 852 LSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYIS 904
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 127 SLDLIVKTLQHLGASANVTAGSSKAPASDICRQCVCK 237
SLD++ K + HL A+ + AG ++A + +C K
Sbjct: 785 SLDMLRKDIDHLKATFALEAGRNRAGQLILRNECASK 821
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 79 FLKKWVGLWLSSYFSSSLDLIVKTLQHLGASANVTAGSSKAPASDICRQCVCKD 240
+ K+ + S S LD + L+H+ A N+T +K+ A + RQ D
Sbjct: 23 YAKQLIASSSDSEEESELDTNKQALEHINAQKNITHNENKS-AEPLSRQSTILD 75
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 379 SIEILNLSRCKIDVIENASFKELQEMRVLDLSYN 480
S+E+L L +I + + SFK LQ ++ L L+ N
Sbjct: 218 SLEVLYLEANEIILSKATSFKNLQFLQTLSLANN 251
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -3
Query: 297 PFFFTEERVQILIVAINFIVFANALSTNIGSRGFR*SCS 181
PF+ E+ + + ++ + A S +IG++G CS
Sbjct: 146 PFYSISEKYSFCNLKTSALILSKAASASIGNKGLFLKCS 184
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 122 EKYEDSHSPTHFFKNQYIG 66
EK + S P+ FF+NQ+IG
Sbjct: 63 EKTKQSTVPSIFFRNQFIG 81
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 109 IATAQPIFLKINISEIFIGAVLFRHS 32
+ATA+PI KI+ + I AVL R S
Sbjct: 227 LATAKPIIDKIDPYHVSISAVLTRES 252
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 79 FLKKWVGLWLSSYFSSSLDLIVKTLQHLGASANVTAG 189
FL V L L +Y S L +TLQ+LG+ V G
Sbjct: 333 FLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLG 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,419
Number of Sequences: 5004
Number of extensions: 37679
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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