Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32274
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    32   0.086
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    28   1.1  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   1.8  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   5.6  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   7.5  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   7.5  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   9.9  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   9.9  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 31.9 bits (69), Expect = 0.086
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
 Frame = +3

Query: 132 LGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILT 311
           +GL  MG  +  N   KGFTV  Y+ +   ++    N      SI            +  
Sbjct: 12  IGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLAN-EAKGKSIVGAHSLEEFVSKLKK 70

Query: 312 SNKVVLDVYLGK------DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIAL*KGLGFTDA 470
               +L V  GK      +G+    +KG +++D      P+  ++   +A  KG+ F  +
Sbjct: 71  PRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELAK-KGILFVGS 129

Query: 471 PVSGGVMGAQ 500
            VSGG  GA+
Sbjct: 130 GVSGGEEGAR 139


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 602 GPQWNCLAPITLRRGRDLSKSSLRPP 525
           GPQ +C   ++L    DLSKSSL  P
Sbjct: 382 GPQASCTEAVSLTADIDLSKSSLATP 407


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 102 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAA 236
           +S T+ NVA +G GN+GG +   +  KGF          + N  A
Sbjct: 3   ASRTNVNVAIVGTGNIGGELLNQI--KGFNENASTNGTTSFNVVA 45


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 91  DGRIVLTPTRMWLSSASETWEDSWLRTWLK 180
           +G+I+L   ++WL       E  W   WL+
Sbjct: 105 NGKILLIRPKIWLCDDGNFRESRWFTPWLR 134


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 328 STCTWAKMALWLMRKKDRF*SIRV 399
           S   W+ M+ WL++KKD+    R+
Sbjct: 34  SAIYWSCMSFWLLKKKDQIDKERI 57


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 300 KRPRRLHQRLQQWSWLASLRSWPL 229
           K+ +  H+R++  +WL+SL SW L
Sbjct: 186 KQTQETHERIR--NWLSSLNSWQL 207


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 ETWEDSWLRTWLKRV 186
           +TW D+ LRTWL  V
Sbjct: 188 DTWSDNELRTWLHDV 202


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 514 ARVAF*APMTPPDTGASVN---PSPFYKAIGKICLGTFGSI 401
           AR +  AP+  P +G       P P Y+ I +I  GT+G +
Sbjct: 251 ARESVPAPLPSPPSGPIYTYTYPKPAYEKIDQIGEGTYGKV 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,982
Number of Sequences: 5004
Number of extensions: 66978
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)