Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32274
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0663 - 30991390-30992340 62 5e-10
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 59 3e-09
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 53 2e-07
05_07_0134 - 27911920-27912762 51 1e-06
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 34 0.001
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 40 0.002
04_01_0035 - 433848-434372,434905-435381 31 1.1
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 29 2.5
10_08_0642 - 19525774-19526554,19526657-19527075 29 3.3
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 29 4.4
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 5.9
11_06_0743 + 26847652-26849424 28 7.7
>01_06_0663 - 30991390-30992340
Length = 316
Score = 61.7 bits (143), Expect = 5e-10
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Frame = +3
Query: 93 RAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXX 272
R S +T + VA++G G MG MA +L+ G+ + Y+ + G T A S
Sbjct: 13 RPISPDTTR-VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGATLAESPRA 71
Query: 273 XXXXXXXXXSILTSNKVVLDVYLGKD-GVVAHAKKGSLLIDSSTIDPNVPKQIFPIAL*K 449
++ V L G +A G LL+D +T DP + +I A K
Sbjct: 72 AAAAADVIFLMVGFPSDVRSTSLDPSTGALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAK 131
Query: 450 GLGFTDAPVSGGVMGAQNATLAFMA 524
DAPVSGG GA++ATL+ A
Sbjct: 132 SCAAVDAPVSGGDRGARSATLSIFA 156
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 59.3 bits (137), Expect = 3e-09
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Frame = +3
Query: 63 STQCLYTAARRA----YSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNA 230
++Q +Y A++ A + T K + F+GLG MG MA++L+K GF+V YD K L
Sbjct: 302 ASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLAR 361
Query: 231 AAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLD-VYLGKDGVVAHAKKGSLLIDSSTID 407
G +S I+ +N+V + V G G V+ G+ +I SST+
Sbjct: 362 FTDLGGLTKDS-PEEVSKDVEILVIMVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVS 420
Query: 408 PNVPKQIFP--IAL*KGLGFTDAPVSGGVMGAQNATL 512
P ++ A + + DAPVSGGV A TL
Sbjct: 421 PGFVIKLKERLEAECRDIKLVDAPVSGGVKRAAEGTL 457
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 52.8 bits (121), Expect = 2e-07
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Frame = +3
Query: 159 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 338
MA NLV G+ V +D +++ + + +G+ S ++L S+ VLDVY
Sbjct: 1 MARNLVMAGYKVTVHDVNENTMKKFSDDGIPTKLSPLEVSKSSDVVITMLPSSAHVLDVY 60
Query: 339 LGKDGVVAHAK-KGS-LLIDSSTIDPNVPKQ----IFPIAL*KGLGFT------DAPVSG 482
G++G++A+ G L IDSST+DP ++ I L + + DAPVSG
Sbjct: 61 NGRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAYAEKPMMLDAPVSG 120
Query: 483 GVMGAQNATLAFM 521
GV A+ L FM
Sbjct: 121 GVPAAEAGKLTFM 133
>05_07_0134 - 27911920-27912762
Length = 280
Score = 50.8 bits (116), Expect = 1e-06
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Frame = +3
Query: 159 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 338
MAA L+ GF V Y + A G + A S +++ + V V
Sbjct: 1 MAARLLAAGFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDVVFTMVGNPGDVRAVV 60
Query: 339 L-GKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIAL*KGLGFTDAPVSGGVMGAQNATLA 515
L GV+A + G +L+D ++ P++ +++ A G D+PVSGG +GA++ LA
Sbjct: 61 LDAASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGGDVGARDGALA 120
Query: 516 FMA 524
+A
Sbjct: 121 LLA 123
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.9 bits (74), Expect(2) = 0.001
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 123 VAFLGLGNMGGFMAANLVKKGFTV 194
V FLGLG MG MAANL++ GF V
Sbjct: 3 VGFLGLGIMGKAMAANLLRHGFRV 26
Score = 25.8 bits (54), Expect(2) = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 315 NKVVLDVYLGKDGVVAHAKKGSLLIDSSTID 407
N+ + V KDGV+ +G +D ST+D
Sbjct: 30 NRTLSKVVFDKDGVLEQIGEGKGYVDMSTVD 60
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/127 (24%), Positives = 51/127 (40%)
Frame = +3
Query: 48 ARTILSTQCLYTAARRAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALN 227
AR + S C +++ + V FLGLG MG MA+NL+ G V ++ ++ +
Sbjct: 30 ARLVFS--CSASSSSPSGEGGFSGKVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCD 87
Query: 228 AAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTID 407
G S ++L + ++V G +G G +D ST+D
Sbjct: 88 PLLSLGAKYEPSPADVASSCDVTFAMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVD 147
Query: 408 PNVPKQI 428
K I
Sbjct: 148 AATSKLI 154
>04_01_0035 - 433848-434372,434905-435381
Length = 333
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Frame = +3
Query: 84 AARRAY---SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTP 254
AAR Y S + K+V +GLG++G +A L G T+ Y+ S+ ++ + N
Sbjct: 149 AARGDYPLGSKLSGKHVGIIGLGSIGSLIAKRLQAFGCTI-SYN-SRRPKDSVSYNYFPD 206
Query: 255 ANSIXXXXXXXXXXXSILTSNKVVLDVY----LGKDGVVAHAKKGSLLIDSSTI 404
+ ++ + ++D LGKDGVV + +G ++ ++ I
Sbjct: 207 VTDLAAASDVLIVACALNDETRHIVDSSVLEALGKDGVVVNIARGGIVDEAELI 260
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 159 MAANLVKKGFTVRGYDPSKDALN 227
+A L+K+G RGYD SKD+ N
Sbjct: 251 VARRLLKQGLPFRGYDESKDSYN 273
>10_08_0642 - 19525774-19526554,19526657-19527075
Length = 399
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 569 LRRGRDLSKSSLRPPGHEGQGSVLSTHDSS 480
LRRG ++LRPPG +G V+ HD++
Sbjct: 121 LRRGGRAPAAALRPPGLPLRGRVVEPHDAT 150
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -1
Query: 372 FSHEPQRHLCPGTRRARLYCWSIWKRPRRLHQRLQQWSWL 253
F E + G A L WS W R R +H R Q W WL
Sbjct: 68 FMQEEGGKVFTGRMCATLPWWSTW-RGRWIHLRDQPWLWL 106
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 123 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 251
+A +G GN G F+A ++G T+ + S D + AA G +
Sbjct: 704 IAIVGFGNFGQFLARTFARQGHTLLAHSRS-DYSSLAASVGAS 745
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 324 RLYCWSIWKRPRRLHQRLQQWSWLAS-LRSWPLRS 223
R + W+ KR RL +RL+Q W+A+ +R + RS
Sbjct: 94 RRWSWTRGKRTPRLPERLKQRLWMANKIREFSTRS 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,607,654
Number of Sequences: 37544
Number of extensions: 512817
Number of successful extensions: 1476
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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