Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32272
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   7.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    20   7.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   7.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    20   7.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   7.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 125 LHDLSSNRCEPGXXLSFNIYNILV 196
           +H  +     PG  + FN+ NI V
Sbjct: 294 MHHEALTEALPGDNVGFNVKNISV 317


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 125 LHDLSSNRCEPGXXLSFNIYNILV 196
           +H  +     PG  + FN+ NI V
Sbjct: 5   MHHEALTEALPGDNVGFNVKNISV 28


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 101 LICSIIKILHDLSSNRCE 154
           L+ +  ++LH L+S +CE
Sbjct: 400 LLSAYGELLHALTSGKCE 417


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 125 LHDLSSNRCEPGXXLSFNIYNILV 196
           +H  +     PG  + FN+ N+ V
Sbjct: 237 MHHEALQEAVPGDNVGFNVKNVSV 260


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 125 LHDLSSNRCEPGXXLSFNIYNILV 196
           +H  +     PG  + FN+ N+ V
Sbjct: 294 MHHEALQEAVPGDNVGFNVKNVSV 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,907
Number of Sequences: 438
Number of extensions: 590
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)