Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32266
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   1.7  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    24   5.2  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    24   5.2  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    24   6.8  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    24   6.8  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    24   6.8  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    23   9.0  

>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 174 QWVLWSGSVPSR 209
           QW+ WS SVPS+
Sbjct: 88  QWIAWSSSVPSK 99


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 231 LNFCILFWLKTMELV*QQKVKSVMNQILLVLCP 329
           L+ CI  WL  +E      ++SV+ Q  L+L P
Sbjct: 504 LHHCIFPWLPYLEKHADSLLQSVLVQFSLILSP 536


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 175 CHGGSTCLSCK 143
           C+GG  C+SCK
Sbjct: 49  CNGGQPCISCK 59


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 257 QPKQDTKVQYTPNKLKTRRN 198
           +P++DT + + P KLKT ++
Sbjct: 494 KPEEDTVIYWAPLKLKTMKD 513


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 306 DSLPISPFAVKLIPLSSAKTGYKSSI 229
           D LP+  FAV+L+ L     G+ S I
Sbjct: 205 DMLPVPQFAVRLMGLYFDNVGWSSHI 230


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 115 HNHTIKSCSIHLNKNYTVHFFIY 47
           HNHTI + ++ L +  T  F+ Y
Sbjct: 296 HNHTITALAVALGQAKTPEFYQY 318


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 208 REGTLPDHSTHCHGG 164
           +E T P H  HCH G
Sbjct: 41  QESTYPIHFVHCHFG 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,096
Number of Sequences: 5004
Number of extensions: 28067
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)