Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32266
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305           28   2.0  
07_01_0816 + 6526638-6527567,6527993-6528028                           27   2.7  
08_02_0116 + 12762009-12763021,12763421-12763436                       27   4.7  

>04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305
          Length = 236

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 175 CHGGSTCLSCKLNSVSF**SHNHTIKSCSIHLNKNYTVHFFIYH 44
           C    +  SC+ N+ S    HNH     S H+ +   +  FIYH
Sbjct: 179 CSNKESPKSCQFNATSLCEDHNHPSGLVS-HMFRRLVIDAFIYH 221


>07_01_0816 + 6526638-6527567,6527993-6528028
          Length = 321

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 303 SLPISPFAVKLIPLSSAKTGYKSSIHAK*TKNAKEHFPTTVPIVMAEVP 157
           +LP  P+ + LI  +     +  S+H+   K A+EH P  + + + EVP
Sbjct: 32  NLPPGPWTLPLIGSAHHLVSWSESVHSVIGKLAREHGP-VMQLWLGEVP 79


>08_02_0116 + 12762009-12763021,12763421-12763436
          Length = 342

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 109 GYVIIKTIRCLVYMKDRYFRHDNGYCGREVFLRVFSLFGVY 231
           GY++      L  +KD+ F H +  C R V   +F +FG Y
Sbjct: 202 GYIMFDDSCELNCLKDKIFAHSDLPCSRNV---IFHIFGEY 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,792,833
Number of Sequences: 37544
Number of extensions: 163297
Number of successful extensions: 294
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)