Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32266
(331 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003384-6|AAB54238.2| 451|Caenorhabditis elegans Coenzyme q (u... 29 0.60
AF125442-2|AAD12792.1| 360|Caenorhabditis elegans Serpentine re... 28 1.4
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 27 2.4
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 27 2.4
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 27 2.4
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 27 2.4
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 27 2.4
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 27 2.4
Z82086-5|CAB04992.2| 325|Caenorhabditis elegans Hypothetical pr... 27 4.2
>AF003384-6|AAB54238.2| 451|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 6 protein.
Length = 451
Score = 29.5 bits (63), Expect = 0.60
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 271 NSIVFSQNRIQKFNTRQIN*KREGTLPDH 185
N +F+ NR+ F T K EGT P H
Sbjct: 287 NQTIFALNRMNPFRTETFGRKAEGTTPPH 315
>AF125442-2|AAD12792.1| 360|Caenorhabditis elegans Serpentine
receptor, class v protein19 protein.
Length = 360
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 106 YGYVIIKTIRCLVYMKDRYFRHDNGYCGREVFLRVFSL 219
YG ++ R + K + DN +CG+ ++L+++ L
Sbjct: 115 YGITLLTVHRYCIIAKPLRVKIDNFFCGKSIYLKMWEL 152
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 270 IPLSSAKTGYKSSIHAK*TKNAKEHFPTTVPIVMAEVPVFHVN*TAYRFNNHITIQLNHV 91
+ + ++ G SS T N+ + F T P + +V F NH+T+ N++
Sbjct: 222 VSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQTTQTNVGTPPPVFRNHMTLHNNNM 281
Query: 90 LFT 82
FT
Sbjct: 282 DFT 284
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 270 IPLSSAKTGYKSSIHAK*TKNAKEHFPTTVPIVMAEVPVFHVN*TAYRFNNHITIQLNHV 91
+ + ++ G SS T N+ + F T P + +V F NH+T+ N++
Sbjct: 222 VSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQTTQTNVGTPPPVFRNHMTLHNNNM 281
Query: 90 LFT 82
FT
Sbjct: 282 DFT 284
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 270 IPLSSAKTGYKSSIHAK*TKNAKEHFPTTVPIVMAEVPVFHVN*TAYRFNNHITIQLNHV 91
+ + ++ G SS T N+ + F T P + +V F NH+T+ N++
Sbjct: 222 VSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQTTQTNVGTPPPVFRNHMTLHNNNM 281
Query: 90 LFT 82
FT
Sbjct: 282 DFT 284
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 270 IPLSSAKTGYKSSIHAK*TKNAKEHFPTTVPIVMAEVPVFHVN*TAYRFNNHITIQLNHV 91
+ + ++ G SS T N+ + F T P + +V F NH+T+ N++
Sbjct: 222 VSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQTTQTNVGTPPPVFRNHMTLHNNNM 281
Query: 90 LFT 82
FT
Sbjct: 282 DFT 284
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 270 IPLSSAKTGYKSSIHAK*TKNAKEHFPTTVPIVMAEVPVFHVN*TAYRFNNHITIQLNHV 91
+ + ++ G SS T N+ + F T P + +V F NH+T+ N++
Sbjct: 222 VSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQTTQTNVGTPPPVFRNHMTLHNNNM 281
Query: 90 LFT 82
FT
Sbjct: 282 DFT 284
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 270 IPLSSAKTGYKSSIHAK*TKNAKEHFPTTVPIVMAEVPVFHVN*TAYRFNNHITIQLNHV 91
+ + ++ G SS T N+ + F T P + +V F NH+T+ N++
Sbjct: 222 VSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQTTQTNVGTPPPVFRNHMTLHNNNM 281
Query: 90 LFT 82
FT
Sbjct: 282 DFT 284
>Z82086-5|CAB04992.2| 325|Caenorhabditis elegans Hypothetical
protein ZK228.5 protein.
Length = 325
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 121 IKTIRCLVYMKDRYFRHDNGYCGREVFLRVF 213
+ ++ L++ +DRYFR G G + RVF
Sbjct: 106 VLSVTILMFFEDRYFRLTKGPTGSRSWKRVF 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,921,370
Number of Sequences: 27780
Number of extensions: 157467
Number of successful extensions: 321
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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