Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32263
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024850-2|ABA00152.1|  157|Caenorhabditis elegans Hypothetical ...    31   1.2  
L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    29   4.7  

>AC024850-2|ABA00152.1|  157|Caenorhabditis elegans Hypothetical
           protein Y69A2AL.2 protein.
          Length = 157

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 48  CSCGGLSIESLIGGANTTFQKHQLCFGQLLL 140
           CSC G+S    I G +   Q H  C+ +LLL
Sbjct: 43  CSCSGISPNKPIDGIDRCCQVHNDCYNELLL 73


>L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical
           protein F54F2.5a protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 100 HFKSINSVSVSCFYCGTKKKGIIDI 174
           H +  N    +CFYCG  +KG +D+
Sbjct: 231 HVEMHNDFPKNCFYCGEIRKGTVDL 255


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
            protein Y110A7A.16 protein.
          Length = 1250

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 295  QDGNTRVSCTKLLPRKKKRENKATSGGGGGHYV-NARLNLIDDASGW 432
            + G+++VS    + R+K+ E K +S   GG Y  +A LN++ +   W
Sbjct: 1108 RSGSSKVSMASTVRRRKQIEKKKSSLKEGGEYEDSALLNVLSENYRW 1154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,705
Number of Sequences: 27780
Number of extensions: 355058
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)