Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32262
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 198 5e-52
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 64 1e-11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 47 3e-06
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 46 4e-06
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 29 0.83
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.9
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 3.3
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 4.4
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.8
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 7.7
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 25 7.7
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 25 7.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.7
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 198 bits (484), Expect = 5e-52
Identities = 105/149 (70%), Positives = 119/149 (79%), Gaps = 3/149 (2%)
Frame = +3
Query: 213 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 383
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 384 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 563
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185
Query: 564 VVDLLAPYAKGGKIGVVWRELGVGKTVLI 650
VVDLLAPYA+GGKIG ++ GVGKTV I
Sbjct: 186 VVDLLAPYARGGKIG-LFGGAGVGKTVFI 213
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = +1
Query: 571 ICSLLMP--KEERLGLFGGSWVWAKLY*LWELINNVAKAH 684
+ LL P + ++GLFGG+ V ++ + ELINN+AKAH
Sbjct: 186 VVDLLAPYARGGKIGLFGGAGVGKTVF-IQELINNIAKAH 224
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 64.5 bits (150), Expect = 1e-11
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Frame = +3
Query: 294 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 470
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 471 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGVVWRELGVGKTVLI 650
I T + + +AP + + E + TG+K +D + P +G + ++ + GKT +
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQR-ELIIGDRQTGKTAIA 207
Query: 651 MGT 659
+ T
Sbjct: 208 LDT 210
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 46.8 bits (106), Expect = 3e-06
Identities = 35/126 (27%), Positives = 56/126 (44%)
Frame = -3
Query: 661 SVPIINTVLPTPSSRQTTPIFPPLA*GASRSTTFIPVTRISCCTDMSTNSGASA*IAAVL 482
S PI TV PT +S + PI P +++ +P T SC T S +G S+ ++ +
Sbjct: 188 STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPI 247
Query: 481 SVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKC 302
+ + P S+ + I + S T P +ST C T S+P T +P
Sbjct: 248 TPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPTTSTSC-TTSTSIPPTGNSTTPVTPTV 305
Query: 301 WATSST 284
TS++
Sbjct: 306 PPTSTS 311
Score = 39.9 bits (89), Expect = 3e-04
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Frame = -3
Query: 661 SVPIINTVLPTPSSRQTTPIFPPLA*GASRSTTFIPVTRISCCTDMS-TNSGASA*IAAV 485
S PI TV PT +S + PI P ++ +P T SC T S +G S+ ++
Sbjct: 131 STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTP 190
Query: 484 LSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPS--MAMVRTVFS 311
++ + P S+ + I + S T P +ST C T S+P+ + + T +
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPTTSTSC-TTSTSIPTGGSSSLSTPIT 248
Query: 310 PKCWATSST 284
P TS++
Sbjct: 249 PTVPPTSTS 257
Score = 34.7 bits (76), Expect = 0.013
Identities = 32/126 (25%), Positives = 50/126 (39%)
Frame = -3
Query: 661 SVPIINTVLPTPSSRQTTPIFPPLA*GASRSTTFIPVTRISCCTDMSTNSGASA*IAAVL 482
+ P+ TV PT +S +TP P S++ +P T SC T S ++
Sbjct: 298 TTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTP 357
Query: 481 SVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKC 302
+V SS +P P ++ TG S++ T S+P T +P
Sbjct: 358 TVPPTSTSSTSTP----PPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTV 413
Query: 301 WATSST 284
TSS+
Sbjct: 414 PPTSSS 419
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 46.4 bits (105), Expect = 4e-06
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Frame = +3
Query: 285 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 461
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 462 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGV 611
+ + I+ +E++ TGI +D L A+G KI +
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKIPI 168
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 28.7 bits (61), Expect = 0.83
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGVVWRELGVGKTVL 647
T + A P +++ Q +L TG +V+D L P +GG + G GKTV+
Sbjct: 216 TWPVRAARPVADNLTANQPLL-TGQRVLDALYPCVQGGTTAIP-GAFGCGKTVI 267
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 345 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 461
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 469 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 335
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 3.3
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 276 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 455
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 456 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 590
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 94 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 204
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 475 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 332
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 409 PTGIRMGEPESSTGCPRTKPSVPSMAMV 326
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 617 PNNPNLSSFGIRSEQIDDFYTSYENL 540
PN P++ FGI + Y +++NL
Sbjct: 302 PNQPSIQPFGILMMLVSTIYGNFKNL 327
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 608 PNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVG 477
P+ SSF +E + S +LL+ + + KL SFS+ + S+ G
Sbjct: 323 PDTSSFEKCAELMLTNQISTRSLLISKSIKKLTSFSILTQSIKG 366
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 661 SVPIINTVLPTPSSRQTTPIFPPLA*GASRSTTFIPVTRISCCT 530
S+ TV PT S TT PP S +T P T ++ T
Sbjct: 89 SMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTT 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,489
Number of Sequences: 5004
Number of extensions: 63766
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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