Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32256
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...   167   1e-42
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...   143   2e-35
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    64   2e-11
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   4.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.3  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score =  167 bits (405), Expect = 1e-42
 Identities = 87/147 (59%), Positives = 104/147 (70%)
 Frame = +2

Query: 71  PIYGPFFGVMGAASAIIFSALGAAYGTAKSXTGIAAXSVMXPELIMKSIIPVVMXXXXXX 250
           P+Y PFFGVMG  +AI+F++ GAAYGTAK+  GI+A  V+ P+LI+K+ IPVVM      
Sbjct: 7   PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66

Query: 251 XXXXXXXXXXXXXQEPANYPLYKXFIHLGAGLAVRFSGLAAGFAICIVGDASVRGTAQQP 430
                        ++  +  LY  FI LGAGL+V  +GLAAGFAI IVGDA VRGTAQQP
Sbjct: 67  YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQP 124

Query: 431 XLFVGMILILIFAEVLGLYGLIVAIYL 511
            LFV MILILIFAEVLGLYGLIVA+ L
Sbjct: 125 RLFVAMILILIFAEVLGLYGLIVALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score =  143 bits (346), Expect = 2e-35
 Identities = 72/147 (48%), Positives = 91/147 (61%)
 Frame = +2

Query: 71  PIYGPFFGVMGAASAIIFSALGAAYGTAKSXTGIAAXSVMXPELIMKSIIPVVMXXXXXX 250
           PIY  FFG  G  ++++FS LGA YGTA +  GIAA     PE++MKS+IPVVM      
Sbjct: 7   PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66

Query: 251 XXXXXXXXXXXXXQEPANYPLYKXFIHLGAGLAVRFSGLAAGFAICIVGDASVRGTAQQP 430
                            +Y L+  FIHL AGLAV  +G+AAG+AI +VGD  V+   +Q 
Sbjct: 67  YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQD 126

Query: 431 XLFVGMILILIFAEVLGLYGLIVAIYL 511
            +FV M+LILIFAEVLGLYGLIV + L
Sbjct: 127 RIFVSMVLILIFAEVLGLYGLIVGLIL 153


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
 Frame = +2

Query: 89  FGVMGAASAIIFSALGAAYGTAKSXTGIAAXSVMXPELIMKSIIPVVMXXXXXXXXXXXX 268
           +G++G AS + F  +GAA+G     T I   +V  P +  K++I ++             
Sbjct: 45  WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104

Query: 269 XXXXXXXQE--PANY----PLYKXFIHLGAGLAVRFSGLAAGFAICIVGDASVRGTAQQP 430
                   +  PA +      Y  F     G+ V    L  G  + I G ++    AQ  
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164

Query: 431 XLFVGMILILIFAEVLGLYGLIVAIYL 511
            LFV ++++ IF  VLGL+GLIV + +
Sbjct: 165 SLFVKVLVVEIFGSVLGLFGLIVGLLI 191


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 305 YPLYKXFIHLGAG----LAVRFSGLAAGFAICIVGDASVRG 415
           Y L K ++ +  G    +A+ FSG++AG+   I G     G
Sbjct: 359 YDLLKEYVSISCGRLFAVALLFSGMSAGYVCTIAGQIVSEG 399


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 474 YWVFTDLSSPSTCTQNKRPEHTPLPSP 554
           YW +T  +SP+   +N R    P P P
Sbjct: 497 YWYYTVFNSPTIIEKNFRQSVGPKPIP 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,292
Number of Sequences: 5004
Number of extensions: 43544
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)