Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32256
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   222   2e-60
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.98 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.1  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  222 bits (543), Expect = 2e-60
 Identities = 115/151 (76%), Positives = 120/151 (79%)
 Frame = +2

Query: 62  ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSXTGIAAXSVMXPELIMKSIIPVVMXXX 241
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKS TGIAA SVM PELIMKSIIPVVM   
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 242 XXXXXXXXXXXXXXXXQEPANYPLYKXFIHLGAGLAVRFSGLAAGFAICIVGDASVRGTA 421
                           +EP  Y L+K F+HLGAGLAV FSGLAAGFAI IVGDA VRGTA
Sbjct: 64  IAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 422 QQPXLFVGMILILIFAEVLGLYGLIVAIYLY 514
           QQP LFVGMILILIFAEVLGLYGLIVAIYLY
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLY 154


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = -2

Query: 517 CVQVDGDDKSVKTQYFSENKNKNHSDE*XRLLSSTTHACISHDAYGETGSQTRESYSQTS 338
           C+  D   +S+ TQ+    +++ HSD     L S  +A I +  + E+ ++       T 
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSDSCCLCLDS-MNAVIRN--FNESENRRNSCLGSTE 384

Query: 337 TQVDEPFVKGVVGWLLEGTSN 275
           T   +   +    ++ E +SN
Sbjct: 385 TYYSKHNTQQFTQYIPESSSN 405


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 60  LKIIQSTDPSLELWGRRLLSSS 125
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 434 LFVGMI-LILIFAEVLGLYGLIVAIY 508
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 97  YGGGVCYHLQR 129
           YG G+ YHL +
Sbjct: 487 YGAGIVYHLSK 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,055
Number of Sequences: 438
Number of extensions: 3030
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)