Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32253
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1347 - 26300295-26300483,26300598-26300657,26300850-263009... 85 3e-17
11_04_0276 + 15691909-15691968,15692070-15692132,15692246-156923... 81 9e-16
11_06_0020 - 19304740-19304790,19304869-19304973,19305063-193051... 70 2e-12
01_01_0854 + 6662533-6662652,6662727-6662996,6663118-6663171,666... 56 2e-08
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937... 53 2e-07
07_03_0996 - 23197758-23198705 30 1.8
06_03_1271 + 28883904-28884326,28885556-28886242 30 1.8
02_01_0368 - 2643310-2643999,2645043-2645468,2645694-2645759 30 1.8
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 29 2.3
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465... 29 4.1
04_04_1115 + 31008213-31008707,31009385-31009689,31010848-310111... 29 4.1
04_04_0985 - 29926952-29927269 28 7.1
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271... 27 9.4
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 27 9.4
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 27 9.4
>08_02_1347 -
26300295-26300483,26300598-26300657,26300850-26300933,
26301410-26301495,26302112-26302184,26302287-26302385,
26302526-26302639,26302751-26302807,26302908-26302994
Length = 282
Score = 85.4 bits (202), Expect = 3e-17
Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 330 WQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMTILSAAFGWIA-T 506
+ F ASLS+++VSE+GD+TF IAA+MAM+HP+ V +GA+SALV MTILS G I
Sbjct: 72 FDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPN 131
Query: 507 VIPRVYTYYVSAALFAIFGIKM 572
+I R +T + L+A FG+++
Sbjct: 132 LISRKHTNSAATVLYAFFGLRL 153
>11_04_0276 +
15691909-15691968,15692070-15692132,15692246-15692371,
15692515-15692613,15692948-15693020,15693634-15693719,
15694993-15695076,15695312-15695371,15695570-15695758
Length = 279
Score = 80.6 bits (190), Expect = 9e-16
Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = +3
Query: 330 WQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMTILSAAFGWIA-T 506
+ ASLS+++VSE+GD+TF IAA+MAM+HP+ IV +GA+SAL MT+LS G I
Sbjct: 69 FDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPN 128
Query: 507 VIPRVYTYYVSAALFAIFGIKM 572
+I R +T + L+ FG+++
Sbjct: 129 LISRKHTNSAATVLYLFFGLRL 150
>11_06_0020 -
19304740-19304790,19304869-19304973,19305063-19305113,
19305377-19305442,19305722-19305882,19306050-19306146,
19306516-19306563,19307173-19307261,19307447-19307492
Length = 237
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 6/84 (7%)
Frame = +3
Query: 336 GFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMTILSAAFGWIATVIP 515
GF A+ +++ VSE+GDKTFFIAA++AM++ R +V G+++AL MTI+S G I +P
Sbjct: 29 GFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVP 88
Query: 516 RVYT------YYVSAALFAIFGIK 569
+ Y + AL A FG K
Sbjct: 89 AQFQTTLPIGEYAAIALLAFFGFK 112
>01_01_0854 +
6662533-6662652,6662727-6662996,6663118-6663171,
6663723-6663784,6663940-6664008,6664082-6664133,
6664287-6664460
Length = 266
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +3
Query: 321 GNFWQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMTILSAAFG 494
G+ GF ++ ++ SELGD+TFFIAA++A ++ I+F G AL MTI+S G
Sbjct: 122 GDISTGFASAFLLIFFSELGDRTFFIAALLAARNSGAIIFLGTFGALAVMTIISVVLG 179
>08_02_0766 -
20993207-20993307,20993510-20993612,20993686-20993730,
20993848-20993916,20994463-20994510,20995357-20995404,
20995492-20995551,20996063-20996119,20996403-20996471,
20996511-20996603
Length = 230
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 19/75 (25%)
Frame = +3
Query: 336 GFLASLSVVIVSELGDKTFFIAA-------------------IMAMKHPRIIVFAGAISA 458
GF SL++ ++SE+GDKTFF AA I+AM++PR +V AG +++
Sbjct: 32 GFTKSLAMTVLSEIGDKTFFAAAGTNSYCLFAKNGIFYLAKIILAMRYPRKLVLAGCLTS 91
Query: 459 LVFMTILSAAFGWIA 503
L MT LS + GW+A
Sbjct: 92 LTVMTALSVSLGWVA 106
>07_03_0996 - 23197758-23198705
Length = 315
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 506 GGDPAESSR*YRHEYKGRNSSSENYDSWMFHRHYRCYEE 390
GG P ++S YR ++ ++ +E +DSWMF + + E
Sbjct: 202 GGAPTDASEVYRPDFV--HAGAEEFDSWMFDTAFGPFPE 238
>06_03_1271 + 28883904-28884326,28885556-28886242
Length = 369
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 518 SVHVLRQRGLVRHIRHQNV*GTAGKWTPTRVRRSWKEV 631
++ LR+ L+RH+RH+NV P RRS+K+V
Sbjct: 73 ALRTLRELKLLRHLRHENVIALKDIMMPVH-RRSFKDV 109
>02_01_0368 - 2643310-2643999,2645043-2645468,2645694-2645759
Length = 393
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 518 SVHVLRQRGLVRHIRHQNV*GTAGKWTPTRVRRSWKEV 631
++ LR+ L+RH+RH+NV P RRS+K+V
Sbjct: 96 ALRTLRELKLLRHLRHENVIALKDIMMPVH-RRSFKDV 132
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +3
Query: 393 FIAAIMAMKHPRIIVFAGAISALVFMTILSAAFGWIATVIPRVYTYYVSAALFAIFGIKM 572
F+ MA++ I V G+++ + ++IL+A GW A V+ R T ++ A + M
Sbjct: 58 FVREDMALRDAEIEVLTGSMNVFMLVSILAA--GWAADVLGRRGTLVLANAFLMAGALAM 115
Query: 573 FEG 581
G
Sbjct: 116 SLG 118
>06_01_0641 -
4652380-4653771,4653850-4654521,4654536-4654707,
4655515-4655690
Length = 803
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 518 SVHVLRQRGLVRHIRHQNV*GTAGKWTPTRVR 613
++ L Q+G + + H N GT+GKW+ R+R
Sbjct: 35 AIDTLVQKGQIIVLVHVNTKGTSGKWSGGRLR 66
>04_04_1115 +
31008213-31008707,31009385-31009689,31010848-31011108,
31011193-31011401,31011490-31011783,31011861-31011901,
31011987-31012055,31012164-31012264,31012351-31012435,
31012539-31012637,31012731-31012799,31012909-31013040,
31013128-31013222,31013340-31013421
Length = 778
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +3
Query: 330 WQGFLASLSVVIVSELGD---KTFF--IAAIMAMKHPRIIVFAGAISALVFMTILS 482
W G ++ V+ ++G+ K F IA + ++HP +++F GA++ ++I++
Sbjct: 532 WHGSDVAVKVLTDQDVGEAQLKEFLREIAIMKRVRHPNVVLFMGAVTKCPHLSIVT 587
>04_04_0985 - 29926952-29927269
Length = 105
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 426 RIIVFAGAI---SALVFMTILSAAFGWIATVIPRVYTYYVSAALFAIFGI 566
R +FAG + +A++++ + + G P Y+YY+ + IFG+
Sbjct: 39 RRALFAGGVGKAAAVLYLALFRSPAGLFLRNNPLFYSYYIVLVIVVIFGV 88
>11_06_0713 +
26524984-26525276,26526008-26526434,26526550-26527171,
26528059-26528099,26528181-26528249,26528565-26528665,
26529300-26529378,26529955-26530053,26530129-26530197,
26530326-26530375,26530482-26530548,26531031-26531125,
26534469-26534856
Length = 799
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/29 (31%), Positives = 21/29 (72%)
Frame = +3
Query: 396 IAAIMAMKHPRIIVFAGAISALVFMTILS 482
+A + ++HP +I+F GA+++L + I++
Sbjct: 485 VALMKKLRHPNVILFMGAVASLQRLCIVT 513
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +3
Query: 342 LASLSVVIVSE----LGDKTFFIAAIMAMKHPRIIVFAGAISALVFMTILSAAFGWIATV 509
LAS++ +++ + F+ + + +I V AG+++ + ++IL+A GW A V
Sbjct: 34 LASMTTILMGYNLALMSGAQLFVREDVGLSDAQIEVLAGSMNVFMLVSILAA--GWAADV 91
Query: 510 IPRVYTYYVSAALFAIFGIKMFEG 581
+ R T ++ A + M G
Sbjct: 92 LGRRGTLVLANAYLMAGALAMSLG 115
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 558 FGIKMFEGRLENGPQRGSGGVG 623
+G EG NGP RGSGG G
Sbjct: 61 YGAPAREGAGRNGPGRGSGGFG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,820,381
Number of Sequences: 37544
Number of extensions: 324486
Number of successful extensions: 958
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -