Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32253
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical ...   125   3e-29
AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical ...   125   3e-29
Z81473-2|CAB03898.1|  240|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81473-1|CAB03897.1|  302|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical pr...    27   8.4  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    27   8.4  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    27   8.4  

>AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1b protein.
          Length = 255

 Score =  125 bits (301), Expect = 3e-29
 Identities = 57/98 (58%), Positives = 71/98 (72%)
 Frame = +3

Query: 324 NFWQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMTILSAAFGWIA 503
           +F+ GFLAS SV++VSELGDKT+FIA IM+M+H R+ VF+GA+ AL  MT+LSA  GWI 
Sbjct: 64  SFYHGFLASFSVIVVSELGDKTWFIAVIMSMRHSRLTVFSGAMGALALMTVLSACLGWIT 123

Query: 504 TVIPRVYTYYVSAALFAIFGIKMFEGRLENGPQRGSGG 617
            VIPR  TYY+S ALFA+FG+KM        P  G  G
Sbjct: 124 QVIPRAVTYYLSTALFALFGLKMLHEGWTMSPNEGQEG 161



 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 568 KCLRDGWKMDPNEGQEELE 624
           K L +GW M PNEGQE  E
Sbjct: 145 KMLHEGWTMSPNEGQEGYE 163


>AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1a protein.
          Length = 297

 Score =  125 bits (301), Expect = 3e-29
 Identities = 57/98 (58%), Positives = 71/98 (72%)
 Frame = +3

Query: 324 NFWQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMTILSAAFGWIA 503
           +F+ GFLAS SV++VSELGDKT+FIA IM+M+H R+ VF+GA+ AL  MT+LSA  GWI 
Sbjct: 64  SFYHGFLASFSVIVVSELGDKTWFIAVIMSMRHSRLTVFSGAMGALALMTVLSACLGWIT 123

Query: 504 TVIPRVYTYYVSAALFAIFGIKMFEGRLENGPQRGSGG 617
            VIPR  TYY+S ALFA+FG+KM        P  G  G
Sbjct: 124 QVIPRAVTYYLSTALFALFGLKMLHEGWTMSPNEGQEG 161



 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 568 KCLRDGWKMDPNEGQEELE 624
           K L +GW M PNEGQE  E
Sbjct: 145 KMLHEGWTMSPNEGQEGYE 163


>Z81473-2|CAB03898.1|  240|Caenorhabditis elegans Hypothetical
           protein C17D12.1b protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 386 NVLHSSDNGDETSKNHSFRWSYFGPCIHDDTIGCFRLDRHRDPKSVHVLRQRGLVRHIRH 565
           N + SSD  DE+ +   FR  +       +   C R D  R P++ H    +  VR + H
Sbjct: 20  NPVFSSDEEDESDEEAVFRHDHLNRSSATEWTMCTRCDSLRPPRAHHCRVCKRCVRKMDH 79


>Z81473-1|CAB03897.1|  302|Caenorhabditis elegans Hypothetical
           protein C17D12.1a protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 386 NVLHSSDNGDETSKNHSFRWSYFGPCIHDDTIGCFRLDRHRDPKSVHVLRQRGLVRHIRH 565
           N + SSD  DE+ +   FR  +       +   C R D  R P++ H    +  VR + H
Sbjct: 82  NPVFSSDEEDESDEEAVFRHDHLNRSSATEWTMCTRCDSLRPPRAHHCRVCKRCVRKMDH 141


>Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical
           protein T03E6.6 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 494 AESSR*YRHEYKGRNSSSENYDSWMFHRHYRCYEE 390
           A+ S  Y +EY   +S SEN++++ +  ++  YEE
Sbjct: 2   AKLSEYYEYEYDFFSSYSENFENFTYPIYFEDYEE 36


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 249 LERQKLPMSLRRHRQLGI 196
           L+RQKL + +RRHR L I
Sbjct: 314 LDRQKLEIEIRRHRNLNI 331


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 249 LERQKLPMSLRRHRQLGI 196
           L+RQKL + +RRHR L I
Sbjct: 314 LDRQKLEIEIRRHRNLNI 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,671
Number of Sequences: 27780
Number of extensions: 267995
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)