Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32249
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    29   0.26 
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   1.8  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   1.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   3.2  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   5.6  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    24   7.4  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    24   7.4  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    24   9.8  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    24   9.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   9.8  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 260 VNYTILHKIIQNL--RQSFFRTHCVTLTENMRSVIQ 159
           V+  +   +I+NL   + F RTHCV LT N  +V++
Sbjct: 734 VDQHVSRDLIKNLFGPEGFLRTHCVVLTTNSLNVLK 769


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 309 NAHRQKVCAKCDPTAAGELHNFTQDNSKSSTK 214
           NA +Q V  K  PT   +L  F Q+N   STK
Sbjct: 324 NAIKQLVFDKLPPTICMQLKRFEQNNFAMSTK 355


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 115 SLSNTETLFGSRPVRTKAARAIRLM 41
           SLS T TL G R V   AAR ++LM
Sbjct: 7   SLSFTNTLSGKRNVLRPAARELKLM 31


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 70  FEPAGSRIMFQCLTNSIGGLGRSIVFNNLR 159
           F P  + I+F   T+ I G+ + ++ NN+R
Sbjct: 371 FHPPAAMILFISCTSFISGILQLVLLNNIR 400


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 255 IHRPRSDRILHKLFDGV 305
           IH P S+ +LHK+FD V
Sbjct: 344 IHGPDSNIMLHKVFDDV 360


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 263 PVNYTILHKIIQNLRQSFFRTHCVTL 186
           PV+YT+LH  IQ +    F+T C  L
Sbjct: 743 PVHYTVLHDEIQ-MPPDQFQTLCYNL 767


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 305 HTVKKFVQNAIRPRPVNYTIL 243
           HTVK  VQN IRP  + + +L
Sbjct: 190 HTVK-MVQNGIRPEGIEHLLL 209


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 209 KNFVEDFELSCVKLCNSPAAVGSHF 283
           K++VE +ELSC +   +  ++G ++
Sbjct: 507 KHYVEAWELSCKRFAPAQRSLGKYY 531


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 369 DELVDITGPSYHRDDAR 319
           DE+ +I+ PSY  DD R
Sbjct: 611 DEISEISSPSYSSDDDR 627


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 163  YSVNY*KRYFFRDLRLSLSNTETLF 89
            ++V+Y   Y+F D  L + +T T+F
Sbjct: 1815 HTVSYLYSYYFEDYELEIVSTLTMF 1839


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,975
Number of Sequences: 5004
Number of extensions: 31598
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)