Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32249
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81532-5|CAE17816.1|  101|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical ...    28   2.1  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    27   6.4  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    27   6.4  
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m...    26   8.5  
AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk (m...    26   8.5  
AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical ...    26   8.5  

>Z81532-5|CAE17816.1|  101|Caenorhabditis elegans Hypothetical
           protein F36F2.8 protein.
          Length = 101

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 64  LSFEPAGSRIMFQCLTNSIGGLGRSIVFNNLRCITDR 174
           LS +    R  FQCLTN +   G    F++ RCIT +
Sbjct: 17  LSTQHRTCRRSFQCLTNEVCHHGYCQSFDDNRCITSQ 53


>AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical
           protein ZK105.3 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 263 PVNYTILHKIIQNLRQSFFRTHCVTLTENMR 171
           P+NY  +H     + + +F  HCVTL + MR
Sbjct: 547 PINY--VHVNPAEIHKGYFAYHCVTLVKEMR 575


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 256 FTGRGRIAFCTNFLTVCVEPIARIVPVIRGPCDIDEFVLALK 381
           F+  G+     NFLT+  E    + PV+  PC + E +L+L+
Sbjct: 697 FSYEGQKGNANNFLTL--EDCGLVCPVLPNPCSLGEPLLSLQ 736


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 194 VTLTENMRSVIQRKLLKTILLPRPPIEFVK 105
           +TLT+     + R+ ++T+ L R P+ FVK
Sbjct: 779 ITLTQQRERDLHREDIRTMSLVRDPLNFVK 808


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 194  VTLTENMRSVIQRKLLKTILLPRPPIEFVK 105
            +TLT+     + R+ ++T+ L R P+ FVK
Sbjct: 954  ITLTQQRERDLHREDIRTMSLVRDPLNFVK 983


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 194 VTLTENMRSVIQRKLLKTILLPRPPIEFVK 105
           +TLT+     + R+ ++T+ L R P+ FVK
Sbjct: 693 ITLTQQRERDLHREDIRTMSLVRDPLNFVK 722


>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (mixed
            lineage kinase)homolog protein 1, isoform a protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 115  SIGGLGRSIVFNNLRCITDRIFSVSVTQCVRKKLCRRF*IILCKI 249
            ++G +G S    N+RC T  + +    QC + +  RR   +  KI
Sbjct: 896  TVGEVGNSPYSENIRCATRNVQNPQYIQCKKNQNPRRIPALPMKI 940


>AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk
           (mixed lineage kinase)homolog protein 1, isoform b
           protein.
          Length = 978

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 115 SIGGLGRSIVFNNLRCITDRIFSVSVTQCVRKKLCRRF*IILCKI 249
           ++G +G S    N+RC T  + +    QC + +  RR   +  KI
Sbjct: 834 TVGEVGNSPYSENIRCATRNVQNPQYIQCKKNQNPRRIPALPMKI 878


>AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical
           protein C39B5.2 protein.
          Length = 409

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 279 CDPTAAGELHNFTQDNSKSST 217
           C  T AGELH    +N +S+T
Sbjct: 85  CQRTDAGELHKIIMENDESNT 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,109,601
Number of Sequences: 27780
Number of extensions: 185396
Number of successful extensions: 482
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)