Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32247
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    29   0.40 
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    27   2.1  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   3.7  
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M...    26   4.9  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   6.4  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   6.4  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   8.5  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.5  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 236 NKVDQNIKKLLVLSEPASDPNIVEKIIQRAKKQKPLLENTXV 361
           NK+D  + ++L    P + PN + +I+Q +K    L EN  +
Sbjct: 116 NKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMI 157


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 245 DQNIKKLLVLSEPASDPNIVEKIIQRAKKQKPLL 346
           D N+K+     E +S  N+ E +++R KK  P+L
Sbjct: 385 DHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPIL 418


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 501 PQLHQECPYTYIF*YNYVIQLQNNSF 424
           P +    PYT++  Y Y   + NNS+
Sbjct: 450 PAIPPNVPYTFVDPYTYACYINNNSY 475


>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 257 KKLLVLSEPASDPN------IVEKIIQRAKKQKPLLENTXVKKGKEKSILFPEEKQSFQD 418
           +KLL  +  ++D N       ++   +R K+ + LL     K   ++ +L PEE +  Q+
Sbjct: 35  RKLLEEANSSADENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQN 94

Query: 419 F 421
           F
Sbjct: 95  F 95


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +3

Query: 414 KTLKKNCFVAELHNYIKKYMYMDIPDAVVGKFILISTATLFILTTLWINTY 566
           +TL  + F ++L+  +   +++ + ++    F  +S  +L +LT LWI  +
Sbjct: 598 QTLTDSVFSSKLYKLVIFVVFLSLVNSGPFIFRALSKKSLAVLTMLWITLF 648


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 141 KSVVRNVRGLQVKQFLIHTKVEVKKRT--TQLMIIK 242
           K +VRN   + ++ ++ H K+++ K T  +++ I+K
Sbjct: 286 KLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILK 321


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +2

Query: 239 KVDQNIKKLLVLSEPASDPNIVEKIIQRAKKQKPLLENTXVKKGKEKSILFPEEKQSFQD 418
           +V+Q I  +  L+    DPN + ++    KKQ+  + ++     +  SIL  + +Q  +D
Sbjct: 188 QVEQQI--IFDLATSGKDPNKIIQLSDSLKKQQENIASSVSNISRSSSILLSDVQQVAED 245


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 381  PSFSLKKNNHFKTLKKNCFVAELHNYIKKYMYMDIPDAVVGKFILISTA 527
            P F   K    K   +   V+  H   K+ +Y+ I    VGKFIL +T+
Sbjct: 1389 PRFGSFKYPALKLYDRGVLVSISHMPQKEKLYITISADEVGKFILEATS 1437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,088
Number of Sequences: 5004
Number of extensions: 45252
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)