Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32247
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995...    29   2.8  
06_01_0055 + 476204-476388,476481-476543,476684-476800,476920-47...    29   3.7  
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177...    28   5.0  
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    27   8.7  

>04_03_0036 -
           9950353-9950379,9950753-9950791,9951021-9951194,
           9951287-9951415,9951782-9952012,9952655-9952732,
           9953035-9953055,9953790-9953855,9953935-9954015,
           9954148-9954920,9955461-9955654,9956723-9956817,
           9958190-9958219,9958334-9958453,9959185-9959262,
           9959428-9959505,9960459-9960488,9960614-9960739,
           9961239-9961379,9963416-9963532,9963619-9963670,
           9963759-9963890,9964668-9964720,9964816-9964911,
           9965255-9965260,9965416-9965561,9966494-9966629,
           9966885-9967038,9968017-9968154,9968268-9968614
          Length = 1295

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 405 CFSSGKRMDFSLPFFTXVFSSKGFCFLALCII--FSTILGSDAGSER 271
           C+ SGK   F +P F  VFS + F      ++  FS ++  D+  ER
Sbjct: 828 CYESGKLEIFEVPSFRCVFSVENFISGEALLVDKFSQLIYEDSTKER 874


>06_01_0055 +
           476204-476388,476481-476543,476684-476800,476920-477328,
           477448-477638,477706-477871
          Length = 376

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 39  KVNHFY*CIILKYVFSFNQTGVGNLSTQKNTA 134
           K  H Y C     +FSF Q  V  LSTQ+N +
Sbjct: 211 KYPHVYSCNAFMCMFSFLQVAVVGLSTQRNVS 242


>02_05_0419 -
           28814754-28816114,28816749-28817435,28817554-28817774,
           28818536-28818750
          Length = 827

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 317 QRAKKQKPLLENTXVKKGKEKSILFPEEKQSFQD 418
           +++KK+K +  ++ +KK  E+ +L    K++FQD
Sbjct: 162 KKSKKRKGITASSDIKKEAEQYVLHAGSKRNFQD 195


>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 435  FVAELHNYIKKYMYMDIPDAVVGKFILISTATLFILTTLWINTYPFL 575
            FV +L  Y+      DIP         +   T+F L + W NTYP +
Sbjct: 1700 FVEKLKIYVDHLR--DIPKVAFNNMKQLKELTIFGLGSSWENTYPII 1744


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,510,795
Number of Sequences: 37544
Number of extensions: 230934
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)