Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32247
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 29 3.4
U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z68751-2|CAA92972.2| 193|Caenorhabditis elegans Hypothetical pr... 28 4.5
U97000-1|AAK68340.1| 115|Caenorhabditis elegans Hypothetical pr... 27 7.8
U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical pr... 27 7.8
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 27 7.8
AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine r... 27 7.8
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
protein F26H11.2c protein.
Length = 2266
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +2
Query: 185 PHPYKSRSEKXXXXXXDNKVDQNIKKLLVLSEPASD--PNIVEKIIQRAKKQKPLLENTX 358
P P K R+ + +V+ I+++ V S PAS P K R KK
Sbjct: 108 PPPTKKRAAQRETPSDAEEVEVKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRRKS 167
Query: 359 VKKGKEKSILFPEEKQSFQDFEKELF 436
+K+ +E I E+ + ++ + F
Sbjct: 168 LKRQEEDIIYMDEDSEEEEESSDDEF 193
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
protein F26H11.2b protein.
Length = 1693
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +2
Query: 185 PHPYKSRSEKXXXXXXDNKVDQNIKKLLVLSEPASD--PNIVEKIIQRAKKQKPLLENTX 358
P P K R+ + +V+ I+++ V S PAS P K R KK
Sbjct: 108 PPPTKKRAAQRETPSDAEEVEVKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRRKS 167
Query: 359 VKKGKEKSILFPEEKQSFQDFEKELF 436
+K+ +E I E+ + ++ + F
Sbjct: 168 LKRQEEDIIYMDEDSEEEEESSDDEF 193
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
protein F26H11.2a protein.
Length = 1691
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +2
Query: 185 PHPYKSRSEKXXXXXXDNKVDQNIKKLLVLSEPASD--PNIVEKIIQRAKKQKPLLENTX 358
P P K R+ + +V+ I+++ V S PAS P K R KK
Sbjct: 108 PPPTKKRAAQRETPSDAEEVEVKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRRKS 167
Query: 359 VKKGKEKSILFPEEKQSFQDFEKELF 436
+K+ +E I E+ + ++ + F
Sbjct: 168 LKRQEEDIIYMDEDSEEEEESSDDEF 193
>U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical
protein F07C3.3 protein.
Length = 791
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 381 PSFSLKKNNHF--KTLKKNCFVAELHNYIKKYMYMDIP 488
P ++ KN+ F KTL+ N FV +N+ KK + ++P
Sbjct: 224 PERNMTKNSMFIKKTLEVNAFVINCYNHSKKAVKPEVP 261
>Z68751-2|CAA92972.2| 193|Caenorhabditis elegans Hypothetical
protein T05E11.2 protein.
Length = 193
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 438 QNNSFSKS*NDCFSSGKRMDFSLPFFTXVFSSKGFCFLALCIIFSTILGS 289
+ S ++ DCF DF L + +S G C LA+C TI S
Sbjct: 57 EGGSHTQPSRDCFG-----DFELASIILISASLGCCILAICFAICTIFTS 101
>U97000-1|AAK68340.1| 115|Caenorhabditis elegans Hypothetical
protein F21F8.5 protein.
Length = 115
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 236 NKVDQNIKKLLVLSEPASDPNIVEKIIQRAKKQKPLLENTXVKKGKE 376
N +D +K+L + SDP + K+ K +PL E ++K K+
Sbjct: 31 NMLDNYMKRLNLTDIHFSDPGGIVKVDTVVNKYQPLTEEEIIRKMKK 77
>U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical
protein C32E12.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 236 NKVDQNIKKLLVLSEPASDPNIVEKIIQRAKKQKPLLENTXVKKGKEK 379
+K ++N+KK SDPN V KI + K +K + KK KEK
Sbjct: 51 DKKEKNVKK-----GSKSDPNAVAKIKKNKKDKKSKDKKPKDKKSKEK 93
>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
homolog) family protein 6 protein.
Length = 1186
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +2
Query: 233 DNKVDQNIKKLLVLSEPASDPNIVEKIIQRAKKQKPLL-ENT--XVK-KGKEKSIL 388
+++ D+N V+ P S P K + K KPLL ENT VK GK K ++
Sbjct: 106 ESEADENASDCEVVESPESTPQSTPKRGGKKKISKPLLAENTPKSVKMAGKSKKVI 161
>AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine
receptor, class z protein5 protein.
Length = 351
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 227 LCCSFFHFYFCMDEELLDLQTSNVSYHAFLVCCVL 123
L C F FY +L+L +V YH + + CV+
Sbjct: 75 LLCLFEMFYGFKIMNMLELDLFDVLYHYYFISCVI 109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,792,107
Number of Sequences: 27780
Number of extensions: 246257
Number of successful extensions: 691
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -