Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32246
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 65 2e-12
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 57 6e-10
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 40 1e-04
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 33 0.009
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 30 0.084
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.19
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 1.8
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 2.4
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 2.4
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 25 2.4
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 3.1
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 3.1
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 24 4.2
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 24 4.2
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 24 4.2
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 24 5.5
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 24 5.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 24 5.5
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 24 5.5
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 23 7.3
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 23 7.3
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 23 7.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 23 7.3
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 23 7.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 23 9.6
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 64.9 bits (151), Expect = 2e-12
Identities = 29/35 (82%), Positives = 34/35 (97%)
Frame = +1
Query: 196 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIG 300
REMRIL++GLD AGKTTILYKL++GE+VTTIPTIG
Sbjct: 16 REMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 56.8 bits (131), Expect = 6e-10
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1
Query: 196 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIG 300
+EMRIL+LGLD AGKTTILYKL++ + V TIPT+G
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVG 54
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 39.5 bits (88), Expect = 1e-04
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 196 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIG 300
RE+R+L+LGLD AGKTTIL L +V PT G
Sbjct: 15 REVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFG 49
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 33.1 bits (72), Expect = 0.009
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 196 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTI 297
+ ++L LGLD AGKTT+L+ L+ + PT+
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTL 52
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.9 bits (64), Expect = 0.084
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +1
Query: 205 RILILGLDGAGKTTILYKLQVGEVV 279
R+ ILG +GAGK+T++ K+ +GEV+
Sbjct: 721 RVAILGPNGAGKSTLI-KVLIGEVI 744
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.7 bits (61), Expect = 0.19
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 196 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTI 297
+E+R++I G G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 1.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 133 NLLLLIRNVYALRLHIKDF*NCFFVLIYTWSTLNILFNNKYCTF 2
N + +R+ + R HI C ++ WS + L NN Y F
Sbjct: 422 NKCIQLRDYFDYRKHI-----CIVTDLFGWSVFDFLKNNNYIPF 460
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 2.4
Identities = 8/23 (34%), Positives = 19/23 (82%)
Frame = +1
Query: 199 EMRILILGLDGAGKTTILYKLQV 267
++++L+LG +GKTTI+ ++++
Sbjct: 74 DIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 193 AREMRILILGLDGAGKTTI 249
++ I+++G+ GAGKTTI
Sbjct: 861 SKNASIILIGMRGAGKTTI 879
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 25.0 bits (52), Expect = 2.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 208 ILILGLDGAGKTTILYKLQVGEVVTTIPTI 297
+ ++G +GKT++ +L E TT+P+I
Sbjct: 40 VFLIGPSDSGKTSLFCELIYKEKKTTVPSI 69
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 193 AREMRILILGLDGAGKTTILYKL 261
A E LILG+ G GKTT + L
Sbjct: 946 AAEHYSLILGMPGTGKTTTISSL 968
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 208 ILILGLDGAGKTTILYKL 261
I+++GL G+GKTT KL
Sbjct: 104 IMMVGLQGSGKTTTCSKL 121
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 208 ILILGLDGAGKTTILYKL 261
I+++G+ G+GKTT + +L
Sbjct: 11 IIVVGMAGSGKTTFMQQL 28
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 131 FIAINKECLCTSFAH*RFLKLF 66
++ I KE LC H F+KLF
Sbjct: 143 YVNIEKEALCILSKHPGFIKLF 164
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 274 PHRLVIYKELSSFRHRPIQ 218
P RL +YK L+S H+PI+
Sbjct: 731 PIRLNVYKHLNSDGHQPIR 749
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 262 VIYKELSSFRHRPIQVSKSAFPLHPAIL 179
++Y LSS +P+Q+S +P PA+L
Sbjct: 1840 LVYPSLSS---KPVQISYDIYPNVPALL 1864
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 23.8 bits (49), Expect = 5.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +1
Query: 202 MRILILGLDGAGKTTIL 252
++++ILG G GKT+I+
Sbjct: 9 LKVIILGESGVGKTSIM 25
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 23.8 bits (49), Expect = 5.5
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +1
Query: 205 RILILGLDGAGKTTIL 252
R+ ++G +GAGKTT++
Sbjct: 622 RVALVGPNGAGKTTLI 637
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 153 NGWSI*LLXRIAGCKGNADFDTWIG-RCRKDDNS 251
N W+ LL R+ GC A + + RC +NS
Sbjct: 613 NSWARNLLLRLTGCSSEAIVENFKQLRCLLQENS 646
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 214 ILGLDGAGKTTILYKLQVGEVVTTIPT 294
I+ LDG G T +L K V PT
Sbjct: 275 IMALDGVGTTALLVKASVHRDGALFPT 301
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +1
Query: 199 EMRILIL-GLDGAGKTTILY 255
+ RI++L GL GAGKTT+ +
Sbjct: 415 DKRIMMLTGLAGAGKTTLAH 434
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 297 NRRYSGHDLTDL*FIKNCRLSGTVQSKY 214
++RY+ + TDL F R+S + KY
Sbjct: 311 SKRYANEECTDLLFSSLGRISSILAKKY 338
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1
Query: 211 LILGLDGAGKTTIL 252
LI+G +G+GKTTI+
Sbjct: 31 LIVGQNGSGKTTII 44
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 23.4 bits (48), Expect = 7.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 115 RNVYALRLHIKDF*NCFFVLIYTWSTLNILFNNKYC 8
R + L+ +IK + +I T+ TLN LF +K+C
Sbjct: 5 RKIMILKRNIKGLKSS--AIIATYLTLNKLFIDKFC 38
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 211 LILGLDGAGKTTILYKLQVG 270
LI+G +G GK+TI+ + +G
Sbjct: 37 LIIGPNGTGKSTIVSAICIG 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,677
Number of Sequences: 5004
Number of extensions: 23264
Number of successful extensions: 75
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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