Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32244
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 317 1e-87
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 177 2e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 165 4e-42
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 123 3e-29
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 99 3e-22
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 93 4e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 91 1e-19
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 50 2e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.010
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.092
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.16
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.49
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.6
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 26 6.0
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 6.0
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 25 8.0
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 8.0
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 8.0
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch... 25 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 317 bits (778), Expect = 1e-87
Identities = 144/156 (92%), Positives = 151/156 (96%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 252 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 431
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 432 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 539
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSG+
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Score = 110 bits (264), Expect = 2e-25
Identities = 50/56 (89%), Positives = 55/56 (98%)
Frame = +1
Query: 538 NGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 705
+GV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDI
Sbjct: 157 DGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDI 212
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 177 bits (430), Expect = 2e-45
Identities = 80/151 (52%), Positives = 109/151 (72%), Gaps = 1/151 (0%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 269
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 270 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 446
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 447 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 539
N PA+ ++Q VL+LYAS RTTGIVL+ G+
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGD 162
Score = 64.9 bits (151), Expect = 1e-11
Identities = 26/56 (46%), Positives = 44/56 (78%)
Frame = +1
Query: 538 NGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 705
+G++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+I
Sbjct: 162 DGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREI 217
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 165 bits (402), Expect = 4e-42
Identities = 77/156 (49%), Positives = 112/156 (71%), Gaps = 2/156 (1%)
Frame = +3
Query: 78 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 251
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 252 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 431
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 432 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 539
MFE + +YVAIQAVLSLYA G ++G+V+DSG+
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Score = 65.7 bits (153), Expect = 6e-12
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = +1
Query: 538 NGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 705
+GV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++
Sbjct: 157 DGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREM 212
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 123 bits (296), Expect = 3e-29
Identities = 72/182 (39%), Positives = 100/182 (54%), Gaps = 32/182 (17%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 218
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 219 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 377
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 378 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 533
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 534 GE 539
G+
Sbjct: 187 GD 188
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +1
Query: 538 NGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 687
+GV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 188 DGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 99 bits (238), Expect = 3e-22
Identities = 55/154 (35%), Positives = 84/154 (54%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 255 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 434
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 435 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 536
MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 93.1 bits (221), Expect = 4e-20
Identities = 50/152 (32%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 269
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 270 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 446
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 447 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSG 536
+N P++ I + S Y + + ++GIVL+ G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLG 173
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 538 NGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 669
N SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 174 NAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 91.5 bits (217), Expect = 1e-19
Identities = 47/156 (30%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 255 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 428
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 429 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 536
+ FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIG 157
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +3
Query: 276 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 443
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 444 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 536
P +A + ++ LYA G G+V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.1 bits (77), Expect = 0.010
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 269
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 270 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 437
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 438 FETFNTPAMYVAIQAVLSLYASGRTT 515
FE F A A L + G T
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFT 143
Score = 33.5 bits (73), Expect = 0.030
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 547 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 705
+H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +I
Sbjct: 168 THIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEI 218
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.092
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 336 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 479
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 135 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 278
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.49
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 232 PTYESFCPM-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 71
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 378 LLTEAPLNPKANREKMTQIMFETFN 452
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 235 SPTYESFC--PMPTITP*WRGLPTIEGNTARGASSPAKPAL 119
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 514 PVSCWTPANGVSHTVPIYEGYALPHAILRLD 606
PVS A+G +HT+P Y GYA ++ + D
Sbjct: 364 PVSMGDYASGTNHTLPTY-GYASSYSGVSTD 393
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 129 NRPCTYRSHCLLPTRQLP 76
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Frame = -1
Query: 604 PDAGWREGVRIPRRWVRCGRHRSPESSTIPVVRP--------DAYSESTAWMATYMAGVL 449
PD W E RI W E + V P D +E +W+ ++ GV
Sbjct: 283 PDTEWHEPTRISYEWDGKDAETYTEDIHLSVDAPLGRRLQRIDVLAEIPSWLKGFVHGVS 342
Query: 448 NVSNMIWVIFSLLALGLR 395
I+ FS + L+
Sbjct: 343 GTKPFIYQYFSPVKFTLK 360
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -1
Query: 259 IPLLLCASSPTYESFCPMPTI-TP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAA 83
IP L ++P +F P P++ +P + T +TA ++SP L P + TN +
Sbjct: 363 IPSPLQNTNPAPSTF-PNPSVASPAFPNSSTSNPSTAPASASPLASTLK-PSTANDTNGS 420
Query: 82 TSSS 71
+SSS
Sbjct: 421 SSSS 424
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +1
Query: 562 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 669
+ EG +P++ ++++ G D+T MK+L + +
Sbjct: 308 VEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +2
Query: 527 GLRRTVSPTPYPSTRDTHSLTPSCVW-TWPV 616
GL+ P PY T D S CV WP+
Sbjct: 2 GLKLLHPPKPYAMTSDPESYASVCVMKKWPI 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,679
Number of Sequences: 5004
Number of extensions: 69568
Number of successful extensions: 242
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -