Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32243
         (546 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    78   2e-16
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   5.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   6.6  
AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant r...    23   6.6  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    23   8.7  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 77.8 bits (183), Expect = 2e-16
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
 Frame = +3

Query: 3   FSLFDKYGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA-- 176
           FS++D  G G +   +LG  +R+L  NPT  EL   +      G   I F EFL + +  
Sbjct: 17  FSVYDWEGSGQMDAMDLGNALRALNLNPT-IELIGKMGGTQKRGEKKIKFEEFLPIFSQV 75

Query: 177 RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DID 350
           +K K+    E+  E  +++DK+ +G +  AEL H +T LGE+L D E+D ++++     D
Sbjct: 76  KKEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPED 135

Query: 351 GDGQVNYEEFVTMM 392
            DG + Y  F+  M
Sbjct: 136 DDGNIPYAPFLKKM 149



 Score = 31.9 bits (69), Expect = 0.014
 Identities = 20/75 (26%), Positives = 40/75 (53%)
 Frame = +3

Query: 171 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 350
           MA  +KD + E+  +  F V+D +G+G + A +L + +  L    T E + +M       
Sbjct: 1   MANDLKDVEIEKA-QFVFSVYDWEGSGQMDAMDLGNALRALNLNPTIELIGKM-GGTQKR 58

Query: 351 GDGQVNYEEFVTMMT 395
           G+ ++ +EEF+ + +
Sbjct: 59  GEKKIKFEEFLPIFS 73


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 234  DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 362
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 421  CVKSREFKYTFCFMTHNISIVLDLHFSS 504
            C +     Y F   T NIS + + H+SS
Sbjct: 3093 CYEQHGLSYVFPHNTSNISGITEDHYSS 3120


>AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant
           receptor Or1 protein.
          Length = 417

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 173 HHCQELGKVYRAVSVRVYFIDHVLKFG 93
           HH +  G +Y  V+  V F   +L FG
Sbjct: 253 HHSKVYGTMYAKVTECVLFHKDILSFG 279


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
 Frame = +2

Query: 83  PHRSRTSRHDQ*SRR---GRKRHDRLSRVLDNDGAQDE 187
           P      RH   S R   G   H R  R+ D+DG   E
Sbjct: 112 PEEKLRGRHSSESDREGMGHDSHKRTHRLSDSDGGSTE 149


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,986
Number of Sequences: 2352
Number of extensions: 8361
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50460840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)