Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32240
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 0.44
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 4.1
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 4.1
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 9.4
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.4
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 9.4
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 9.4
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 9.4
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 168 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 299
P+ T +L ++IL T+ SL + VSP Y +FT LL
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 144 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 314
N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L +
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349
Query: 315 LRRITTRM 338
+ +T ++
Sbjct: 350 VNELTLKL 357
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 289 VNIRYFTGLTATGRSSDNATVCRIVEFSME 200
+N+ Y + L+ATG S + TV I E + E
Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 178 LPFNCYLFPWRILRSCIPSHYRWIFP 255
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 94 GVLANRHRSTEIASSAAADGSEHSY 20
GV + RSTEIA + + DG+ + Y
Sbjct: 1632 GVYSPYRRSTEIAENMSMDGNAYPY 1656
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 365 WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 270
W +LLV + C NS +R+G Q +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -2
Query: 586 AEFVISHDAIMTXVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSE 446
AE++IS + + A+ +GH + +L + + +T A G +P +
Sbjct: 1392 AEYLISETHRLINDILDALEVIGHEQTDLNHIFINFTPAF-GLAPKQ 1437
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 489 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 382
PSD T VP + S PW TTP P W+
Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -2
Query: 478 TAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM-CYSYDAHIL-VVILLREFG 305
T + G P K GYY+T+ S +D G+ + + I + +L R +
Sbjct: 1118 TFGIGGKDPETGEVKPGFGYYETICGGSGAIDGLDGTSGVHTHMTNTRITDLEVLERRYP 1177
Query: 304 MVNSKVNIRYFTGLTATGRSSDNATVCRIVEF 209
++ K IR +G G+ V R +EF
Sbjct: 1178 VILRKFIIRENSG--GAGKYKGGDGVIRDIEF 1207
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -2
Query: 571 SHDAIMTXVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 392
S+D I + F H+E + +Y L E+ +N GYYD D S
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627
Query: 391 L 389
L
Sbjct: 628 L 628
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,777
Number of Sequences: 5004
Number of extensions: 62165
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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