Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32239
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 46 2e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 1e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 38 5e-04
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 38 7e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.001
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.002
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 35 0.005
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.008
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.014
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.019
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 32 0.043
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.043
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 31 0.057
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.099
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.099
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 30 0.13
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.13
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.40
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.40
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 0.70
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 1.6
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 27 1.6
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 2.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 2.8
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 3.7
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 3.7
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 4.9
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 6.5
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 6.5
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 25 6.5
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 24 8.6
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 24 8.6
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 8.6
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 24 8.6
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 46.4 bits (105), Expect = 2e-06
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIK 318
G + + T D+ F+ YG +++C ++ +GFV +E+ + R+ + + G+ G I
Sbjct: 9 GRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGSRIV 68
Query: 319 IEAAK 333
+E A+
Sbjct: 69 VEPAR 73
Score = 36.7 bits (81), Expect = 0.002
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +1
Query: 142 NLSDKTTEADLRPLFEKYGTVVECDIVRNY---GFVHMENEQVGREAIQNLNGELVHGQA 312
NLS+ + DL+ + K G D R G V E+ R A+ +LNGE++ GQA
Sbjct: 104 NLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQA 163
Query: 313 IKIEA---AKSRXXPSTPT 360
+ + A + P P+
Sbjct: 164 VTLREDPDAANEPLPEVPS 182
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 43.6 bits (98), Expect = 1e-05
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Frame = +1
Query: 145 LSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNLNGELV 300
++ + E +L+ +F K+GTV I+R +GF+ + AI NLN +
Sbjct: 108 IASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEF 167
Query: 301 HGQAIKIEAAKSRXXPSTPTTKIFVG 378
+G+ + ++ AK R P +PT ++G
Sbjct: 168 YGRVLNVQKAK-RSRPHSPTPGKYMG 192
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 38.3 bits (85), Expect = 5e-04
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Frame = +1
Query: 127 KSSFGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 282
K G L+ +TT+ LR FE++G V++C ++R+ +GF+ +N + E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 283 LNGELVHGQAIKIEAAKSRXXPSTPTTKIFVGNLTDKTRAPEVRELF 423
+ + G+ I + A R T K+FVG + E R F
Sbjct: 224 EHH--LDGKIIDPKRAIPR-EEQEKTAKMFVGGVPGDCTEEEFRNFF 267
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 37.9 bits (84), Expect = 7e-04
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 115 PVLSKSSFGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG 291
P S+ G+L+ K+ ++ +L +F+ YG + + + NYGFV + A+ G
Sbjct: 360 PSASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQG 419
Query: 292 ELVHGQAIKIEAAK 333
V GQ + +E +K
Sbjct: 420 NFVRGQKLHLEISK 433
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.1 bits (82), Expect = 0.001
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Frame = +1
Query: 109 RAPVLSKSSFGNLSDKTTEAD-----LRPLFEKYGTVVECDIV-------RNYGFVHMEN 252
R P L K GN+ K + L F +G ++ C + + YGFVH ++
Sbjct: 158 RDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDS 217
Query: 253 EQVGREAIQNLNGELVHGQAIKIEAAKSRXXPSTPT-------TKIFVGNLTDKTRAPEV 411
+ AI+++NG L++ + + + SR + T +++ NL + E
Sbjct: 218 VESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEF 277
Query: 412 RELF 423
+LF
Sbjct: 278 SDLF 281
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.3 bits (80), Expect = 0.002
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLNGEL 297
GNL T++ +L LF G+V+ I + +G V ENE +I+ LNG
Sbjct: 285 GNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYR 344
Query: 298 VHGQAIKIEAAK-SRXXPSTPT 360
G+ +++ A + P+ PT
Sbjct: 345 YGGRPLQLSYAHYATPLPAVPT 366
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.1 bits (77), Expect = 0.005
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLNGE 294
G LS + L FE+YGT+V ++ + YG+V E + + A+ +
Sbjct: 268 GRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTK 327
Query: 295 LVHGQAIKIEAAKSRXXPSTPTTKIFVGNLTDKTRAP 405
+ G+ + ++ + R P + GN D+ P
Sbjct: 328 EIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEP 364
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 34.3 bits (75), Expect = 0.008
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAIQNLNGEL 297
GNL+ TE+ L F +G ++ E + R+Y FV + + +EA++N+N +
Sbjct: 11 GNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYSI 70
Query: 298 VHGQAIKIEAA 330
+ + I++ A
Sbjct: 71 LCDRCIRVSPA 81
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.5 bits (73), Expect = 0.014
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNL 285
GNL + TE ++R E +G + + IV RN FVH N +A+Q L
Sbjct: 211 GNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.1 bits (72), Expect = 0.019
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLNGEL 297
GNL + + L F +Y ++V+ +VR+ +GFV ++ +A + NG+
Sbjct: 35 GNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNGKY 94
Query: 298 VHGQAIKIEAAKSRXXPSTPTTK 366
+ + +K+ A S P+ K
Sbjct: 95 IGSRPVKLSRATSDVKPNEVNEK 117
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.9 bits (69), Expect = 0.043
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +1
Query: 145 LSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNLNGELV 300
LS T E+D+ F +YG + +VRN Y FV E E+ + A + G ++
Sbjct: 107 LSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLML 166
Query: 301 HGQAIKIEAAKSR 339
+G+ I ++ + R
Sbjct: 167 NGRRIVVDVERGR 179
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.9 bits (69), Expect = 0.043
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFEKYGTVVECDI----VR--------NYGFVHMENEQVGREAIQN 282
G LS T ++++R LFE GTV + I VR FV N++ +AI+
Sbjct: 49 GRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIET 108
Query: 283 LNGELVHGQAIKIEAAK 333
LNG+ + + I ++ A+
Sbjct: 109 LNGKTLDDREIVVQKAR 125
Score = 26.2 bits (55), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 223 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSR 339
R +GFV N + AI+ +NG+ V + +++A R
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR 296
Score = 25.4 bits (53), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELF 423
++FVG L+ T+ E+R LF
Sbjct: 45 RVFVGRLSTSTKKSEIRSLF 64
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.5 bits (68), Expect = 0.057
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 223 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRXXPS 351
R YGFV +E+ + A+ ++ G L G+ ++I A + S
Sbjct: 224 RKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRAS 266
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 30.7 bits (66), Expect = 0.099
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Frame = +1
Query: 142 NLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNLNGEL 297
NL+ +T + DL F G + +V N YGFV + + A + L +
Sbjct: 11 NLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKK 70
Query: 298 VHGQAIKIEAAKSRXXPSTPT 360
+HG+ ++++ A R T
Sbjct: 71 LHGRILRLDFATPRKRSEVDT 91
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.7 bits (66), Expect = 0.099
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = +1
Query: 172 LRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEA 327
L LF K+G + C +I + YGFV + +AI LNG L + + +
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNY 496
Query: 328 AKSRXXPSTPTTKIF 372
A+ R + IF
Sbjct: 497 AEKREDRKKRLSAIF 511
Score = 29.5 bits (63), Expect = 0.23
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFEKYGTVVECDIVRN-------------YGFVHMENEQVGREAIQ 279
GNL +DL LFE +G + ++ + F+ EN+ AI
Sbjct: 25 GNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNAIA 84
Query: 280 NLNGELVHGQAIKIE 324
+LNG G +K+E
Sbjct: 85 SLNGSSFQGNTLKVE 99
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 30.3 bits (65), Expect = 0.13
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +1
Query: 142 NLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNG 291
NLS K T ++ LF +YG V + + R FV EN Q R A + L+G
Sbjct: 18 NLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.3 bits (65), Expect = 0.13
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1
Query: 209 STTVPYFSNSGLRSASVVLSERFPNEDFEST 117
S+TVP+ SNS R+ S ++ RF + DF ST
Sbjct: 3875 SSTVPW-SNSTFRNTSNTMTSRFVSNDFNST 3904
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 0.40
Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 142 NLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLNGELV 300
N+ T+ D++ +FE +G + + R+ +G++ N R A++ +NG +
Sbjct: 346 NIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDL 405
Query: 301 HGQAIKIEAAKSRXXPSTPTTKI 369
G+ +++ + T ++ +
Sbjct: 406 AGRNMRVCLGNDKFTTETTSSML 428
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 0.40
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFE---------KYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG 291
G+LS E D+ LF K T + ++ R YGFV +E + A+ + G
Sbjct: 191 GDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250
Query: 292 ELVHGQAIKIEAA--KSRXXPSTPTTKI 369
++ + I++ A KS+ +P +
Sbjct: 251 QICGDRPIRVGLATPKSKAHVFSPVNVV 278
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 0.70
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 118 VLSKSSF-GNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVGREA 273
V S++ F G ++ E LR +FE++G+V + NY GF+ M +A
Sbjct: 403 VYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = +1
Query: 181 LFEKYGTVVECDIVRN-----YGFVHMENEQVGREAI 276
LF KYG V++C I+ + F+ +++Q A+
Sbjct: 385 LFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAV 421
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 118 VLSKSSFGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMEN 252
+L K++ G + ++ +RP + + DIVR YGF + N
Sbjct: 137 LLRKTNMGRRQETNSKLSVRPPLSSFQSA--SDIVRRYGFTALWN 179
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 2.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 215 SHSTTVPY-FSNSGLRSASVVLS-ERFPNEDFESTGARHFRLWVTMYKE 75
S +TT+ F N G+ S VV + D+ES G +HF +T +++
Sbjct: 38 SGATTIEIRFKNYGINSIEVVDNGSGIDAGDYESIGKKHFTSKITDFED 86
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 2.8
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 136 FGNLSDKTTEADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAIQNL 285
F ++SD T +L + +YG + ++N GFV N +A+ L
Sbjct: 504 FSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 190 FRIAV*DRLLWFYQKGSRMK--ILKVPVPGILDYGLLC 83
F AV D + F+QKGSR K ++K+ + G+ C
Sbjct: 266 FATAVLDGSIQFWQKGSRTKRPVMKIKDAHLPQQGISC 303
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 3.7
Identities = 28/112 (25%), Positives = 43/112 (38%)
Frame = +1
Query: 34 YLVFIFLTCVIYCYSLYIVTHNLKCRAPVLSKSSFGNLSDKTTEADLRPLFEKYGTVVEC 213
Y VF+FL V Y SL + +P L F S+ A + P F Y +
Sbjct: 6 YSVFLFLHIVFY--SLLSAVNG----SPSLDY--FETCSNFVPRAGI-PTFSPYAVIKNF 56
Query: 214 DIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRXXPSTPTTKI 369
D V ++ + G I NG +H ++ E ++ TTK+
Sbjct: 57 DEVNRMYYIQVVGNLSGVITIVGGNGSHIHAASVYSETYALGKLVTSNTTKL 108
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 4.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 1 VTYTA*VIRGVYLVFIFLTCVIYCYSLYIVTHNLKCRAPVLSKSSF 138
V + A ++ G++L + FL + CYS Y+V + A LS ++F
Sbjct: 443 VHWAAPMVSGIFLGWGFLYVLAVCYS-YLVDCYHEMAASALSVATF 487
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 6.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 423 KQLADFGRARLVR*ITHEYFSGWRR 349
K+ AD A+L +THE GWRR
Sbjct: 480 KERADL-LAKLDNSLTHEQIEGWRR 503
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 6 VYCVGNSWSLFGVHIFNLCYILLFFVHSN 92
+Y SW F +F LC +L+ ++ SN
Sbjct: 317 MYTRAESWKRFQRLLFPLCILLVLYLVSN 345
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 3 HVYCVGNSWSLFGVHIFNLCYILLF 77
+V C WSL VH F + Y + F
Sbjct: 285 YVSCSSRVWSLPYVHAFKIAYSIQF 309
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 24.2 bits (50), Expect = 8.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 139 GNLSDKTTEADLRPLFEKYGTV 204
GNL +TT+ADL+ F + G +
Sbjct: 233 GNLDFETTDADLKEHFGQVGQI 254
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 8.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Frame = +1
Query: 142 NLSDK--TTEADLRPLFEKYGTVVE----C----DIVRNYGFVHMENEQVGREAIQNLNG 291
NL D T ++ L LF +G+++ C I + YGFV + A LNG
Sbjct: 388 NLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNG 447
Query: 292 ELV 300
+V
Sbjct: 448 MMV 450
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 277 QNLNGELVHGQAIKIEAAKSRXXPSTPTTK 366
QNL LV GQ IK K S TTK
Sbjct: 17 QNLTDGLVGGQRIKAPNKKKNRKASKNTTK 46
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 24.2 bits (50), Expect = 8.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 9 YCVGNSWSLFGVHIFNLCYILLFF 80
Y +GN+++L V + L Y+++FF
Sbjct: 441 YILGNAFTLGCVIVGGLAYVVMFF 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,149
Number of Sequences: 5004
Number of extensions: 33315
Number of successful extensions: 138
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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