Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32236
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    75   7e-15
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    29   0.45 
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    27   1.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   5.6  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.7  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    24   9.7  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    24   9.7  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 74.5 bits (175), Expect = 7e-15
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
 Frame = +1

Query: 121 SIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPILYAA 300
           ++  T  +KSGHP +   +A    VLF   M++  + P+  + DRFILS GHA  + Y  
Sbjct: 21  AVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHACVLQYIM 80

Query: 301 WAEAGL-FPLDELKNLRKLDSDLEGHP---TPRLNFVDVGTGSLGQGLAVAAGMA 453
               G    +++LK  R++ S   GHP    P LN ++ G G LGQG+A A G+A
Sbjct: 81  CHLLGYKLTIEDLKQFRQVGSKTPGHPETHNPDLN-IETGAGPLGQGIASAVGLA 134


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -1

Query: 452 AMPAATASPWPSEPVPTSTK 393
           A P ATAS  PSEP P+S K
Sbjct: 401 AKPGATASTTPSEPPPSSIK 420


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 449 MPAATASPWPSEPVPTSTKLS 387
           +P+++ S W  EP P+ST+ S
Sbjct: 204 LPSSSTSSWADEPSPSSTETS 224


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 211 MRYKISAPRDASADRFILSKGHAAPIL 291
           +R  I AP DASA  F +  GH    L
Sbjct: 295 IRTIIEAPEDASATYFAIRLGHTVAFL 321


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 446  PAATASPWPSEPVPTSTKLSRGVGWP 369
            P     P  SEPV T+TKL++ +  P
Sbjct: 943  PKEAPPPPRSEPVSTTTKLAKRITQP 968


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 301 WAEAGLFPLDELKNLRKLDSDLEGHPTPRLNFVDVGTGSLGQGLAVAAGMAY 456
           W   G   +D  + L ++      HP  RL+   + T  +G G A+A+  A+
Sbjct: 390 WVSEGANTMDRGRQLLEVT-----HPRGRLDAGTMSTMGVGMGYAIASAFAH 436


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 452 AMPAATASPWPSEPVPTSTKLS 387
           A+P+  A P PS P+ T   LS
Sbjct: 563 ALPSTPAPPLPSHPMATRKSLS 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,746
Number of Sequences: 5004
Number of extensions: 30170
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)