Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32232
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical...    28   2.8  
AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacti...    27   6.4  
AF100304-3|AAP82634.1|  542|Caenorhabditis elegans Gex interacti...    27   6.4  
AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacti...    27   6.4  
AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacti...    27   6.4  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.1 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 185 PGSGCDPWRYPRVD--CAIVPASPTAGTT 105
           PGS CDP RY  +D  C++ P + T  TT
Sbjct: 179 PGSACDPDRY-NIDGLCSLNPPTTTTTTT 206


>AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacting
           protein protein4, isoform b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = -2

Query: 390 NIKRSVLQMHQRPVHIXQRG*RSILRGCSKEESGPDTPSVXXXXLYKLAW-*CNXGKYYR 214
           N+KR++ Q  +R          SILR  +  +  PD          +  W      +Y R
Sbjct: 172 NLKRTLAQKRKRQREKEMEELESILRETNDIQEDPDITEQLREKRMRAKWAEAARTRYAR 231

Query: 213 WWCTEPTA-GTRERMRSMEVSKG*LRHC 133
               E  A  TR RMR M+ +   ++ C
Sbjct: 232 MTPEERRAHNTRRRMRQMQNAMSAIKAC 259


>AF100304-3|AAP82634.1|  542|Caenorhabditis elegans Gex interacting
           protein protein4, isoform c protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = -2

Query: 390 NIKRSVLQMHQRPVHIXQRG*RSILRGCSKEESGPDTPSVXXXXLYKLAW-*CNXGKYYR 214
           N+KR++ Q  +R          SILR  +  +  PD          +  W      +Y R
Sbjct: 172 NLKRTLAQKRKRQREKEMEELESILRETNDIQEDPDITEQLREKRMRAKWAEAARTRYAR 231

Query: 213 WWCTEPTA-GTRERMRSMEVSKG*LRHC 133
               E  A  TR RMR M+ +   ++ C
Sbjct: 232 MTPEERRAHNTRRRMRQMQNAMSAIKAC 259


>AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacting
           protein protein4, isoform f protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = -2

Query: 390 NIKRSVLQMHQRPVHIXQRG*RSILRGCSKEESGPDTPSVXXXXLYKLAW-*CNXGKYYR 214
           N+KR++ Q  +R          SILR  +  +  PD          +  W      +Y R
Sbjct: 168 NLKRTLAQKRKRQREKEMEELESILRETNDIQEDPDITEQLREKRMRAKWAEAARTRYAR 227

Query: 213 WWCTEPTA-GTRERMRSMEVSKG*LRHC 133
               E  A  TR RMR M+ +   ++ C
Sbjct: 228 MTPEERRAHNTRRRMRQMQNAMSAIKAC 255


>AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacting
           protein protein4, isoform a protein.
          Length = 545

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = -2

Query: 390 NIKRSVLQMHQRPVHIXQRG*RSILRGCSKEESGPDTPSVXXXXLYKLAW-*CNXGKYYR 214
           N+KR++ Q  +R          SILR  +  +  PD          +  W      +Y R
Sbjct: 149 NLKRTLAQKRKRQREKEMEELESILRETNDIQEDPDITEQLREKRMRAKWAEAARTRYAR 208

Query: 213 WWCTEPTA-GTRERMRSMEVSKG*LRHC 133
               E  A  TR RMR M+ +   ++ C
Sbjct: 209 MTPEERRAHNTRRRMRQMQNAMSAIKAC 236


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 204 CTTIGSTCLXC-TTKQVCTKVGG 269
           CT+IGS  L C T   VC+  GG
Sbjct: 429 CTSIGSMQLCCPTVASVCSNTGG 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,751,288
Number of Sequences: 27780
Number of extensions: 185707
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)