Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32230
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   3.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   3.1  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.2  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   7.2  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 196 LIAHILGLSIILFW---IFFLYFSKEFGCLHECP 104
           +I+H L + +IL W   + F  FSK   CLHE P
Sbjct: 547 MISHRLPILLILAWDEPVMFKDFSK---CLHEAP 577


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
 Frame = -1

Query: 229 SSDYTRNNRTHLIAHILGLSIILFWIFFLYF----SKEFG-CLHECPVDNHFV-FXC--- 77
           SS + R    +   H   +    +W FF +F     + F   +   P D++ V F C   
Sbjct: 53  SSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFF 112

Query: 76  -VNPFSFHAFLFRNLIF 29
             + FSF +FLF +L F
Sbjct: 113 YFSLFSFFSFLFTSLHF 129


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 351 QSQAAAYRFSVVVTTRADSQEVLPPVKDGVDDSVMIAAILSLYRANSSRQI 503
           Q QA   +   ++   + S+  LPP+ D    SV+     +L+   S+RQI
Sbjct: 241 QIQAVETKLISILGPTSLSEAALPPLTDVQRTSVLSLLTSTLHSLESARQI 291


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 348 GQSQAAAYRFSVVVTTRADSQEVLPPVKDGVDDSVMIAAILSLYR 482
           G +    Y F V  T     + +LP +  G     +IA++LS+YR
Sbjct: 186 GGTAFGLYHFGVAKTLW--KRNLLPQILAGCASGALIASLLSVYR 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,382
Number of Sequences: 5004
Number of extensions: 44886
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)