Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32230
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376...    29   2.4  
03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296...    29   3.2  
08_01_0861 + 8431027-8431252,8431412-8431497                           28   4.2  
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119...    28   4.2  
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617...    28   5.5  
04_01_0348 + 4563391-4563689,4563965-4564145,4564186-4564467           27   9.7  

>05_06_0271 +
           26836396-26836610,26836793-26836872,26837573-26837641,
           26837694-26837985,26838303-26838399,26838478-26838744,
           26838832-26838909,26839019-26839120,26839251-26839300,
           26839383-26839482,26839645-26839743,26839840-26839968,
           26840319-26840427,26840652-26841055,26841140-26841280,
           26841373-26841393
          Length = 750

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 484 ARYRDRIAAIMTESSTPSFTGGRTSCES 401
           ++Y++++  I+ E+  P F GG+  CE+
Sbjct: 404 SKYQNKLLEIIDENELPEFFGGKCKCEA 431


>03_02_0990 -
           13028011-13028114,13028182-13028554,13029488-13029631,
           13030389-13030396,13030634-13030711,13030968-13031132,
           13031414-13031471
          Length = 309

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 342 CQGQSQAAAYRFSVVVTTRADSQEVLPPVKDGVDDSVMIAAILSLYRANSSRQIQPCI 515
           C  + QA AY +S   T  A S  +LP VKD    + ++     LY   S++Q +P +
Sbjct: 98  CDQEYQALAYPWSAKETP-AYSSMMLPNVKDYKGRTWLLPLAAYLYNPWSTQQTKPAV 154


>08_01_0861 + 8431027-8431252,8431412-8431497
          Length = 103

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 259 IFFIALVGRRAYGPPDGECLPSPMDFSNARG 351
           I F+A     A  PP  +CL +P D + A G
Sbjct: 10  ILFLAAAAVGAAAPPHSQCLDNPPDLTTAGG 40


>01_01_0132 -
           1197988-1198206,1198255-1198356,1198518-1198821,
           1199221-1199292,1199384-1199420,1199527-1199585,
           1199844-1200128,1200293-1200465,1201020-1201213,
           1202245-1202374
          Length = 524

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -3

Query: 341 LLKSMGDGKHSPSGGPYARLPTRAIKKIKKKPCLFLQFI*LYSE*QNSSNSTYFRVVN 168
           LLK M D    P+ GP A+ P    ++  ++P + L  + +Y    N +N  Y+  V+
Sbjct: 55  LLKGMPDSAAGPAEGPIAKYPLVLAEERTRRPDV-LDHLRMYGGGWNITNKHYWASVS 111


>01_06_0403 -
           29060712-29060732,29061260-29061334,29061596-29061762,
           29061841-29061996,29062412-29062535,29062949-29063047,
           29063155-29063254,29063331-29063380,29063461-29063562,
           29063709-29063786,29063865-29064131,29064225-29064321,
           29064446-29064746,29066714-29066805,29066890-29067005,
           29067445-29067519,29067846-29067911,29068206-29068262,
           29068381-29068430,29068518-29068688,29068969-29069060,
           29069124-29069281
          Length = 837

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 484 ARYRDRIAAIMTESSTPSFTGGRTSCE 404
           ++Y++++   + ES  P F GG+  CE
Sbjct: 578 SKYQNKLLETIDESELPDFLGGKCRCE 604


>04_01_0348 + 4563391-4563689,4563965-4564145,4564186-4564467
          Length = 253

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 247 PAYFCNSSDYTRNNRTHLIAHILGLS 170
           PA+ C  S    NN+ HL++ IL +S
Sbjct: 75  PAHICQRSYLDMNNKMHLVSTILRVS 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,831
Number of Sequences: 37544
Number of extensions: 305916
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)