Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32227
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.6  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   7.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.8  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   7.8  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.8  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 502 VFSSILNLFYFVELNNVVILS-HYFRMDTCACVPSCFVGLTQFIVNQLRKKVLFCIMSKR 678
           VFSSI  L   V +  ++I +     +     +P+     T F +++LRK+ +FCI  +R
Sbjct: 547 VFSSINLLTLGVPIATIIIRALDLITIVVPPALPATLTIGTTFAISRLRKQGIFCISPQR 606


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +1

Query: 355 IYTSISDSRALFIYII*EEQMTKQTTNLTSAIL*LILNFRGTSYHCFCIVFSSILNLFYF 534
           +YTSIS    LF+Y+I ++        + S    L ++     Y    + F   +     
Sbjct: 92  VYTSISTMGGLFVYLIAKQARVLDPNQVLSTCSPLWIS---VIYLLNPLTFLPGIACSAD 148

Query: 535 VELNNVVILSHYFRMDTCACVPSCFVGLTQFI 630
           + LN   +++ YF       + +C + LT FI
Sbjct: 149 MILNFTTLMTIYFASCGSYAIYACCMALTVFI 180


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 480 FLPLFLYCFLVNIEPILFR 536
           FLP  +Y   ++I P LFR
Sbjct: 497 FLPTLVYSLFISISPFLFR 515


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +1

Query: 493 FCIVFSSILNLFYFVELNNVVILSHYFRM---DTCAC--VPSCFVGLTQFIVNQL 642
           F ++   +L LF  V +  + +L HYF M   D      +   FV  T+ I+N L
Sbjct: 182 FRLLVGDLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLRIYKTFVNQTEDIINYL 236


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = -1

Query: 169 VISNIIFHSYLKAIG------LTRLVSNIIFHNRHR 80
           V+++II +S+L A        LT L+ N  F NRHR
Sbjct: 334 VVASIIINSHLLATNSNGMLLLTWLLDNSFFRNRHR 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,942
Number of Sequences: 5004
Number of extensions: 61187
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)