Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32227
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0293 + 16321539-16321893,16322020-16322207,16322881-163229...    28   8.1  
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654...    28   8.1  

>07_03_0293 +
           16321539-16321893,16322020-16322207,16322881-16322904,
           16323497-16323550,16323854-16323944,16324715-16324815,
           16324949-16324999,16326626-16326754,16327772-16327834,
           16327928-16328171,16329628-16329776,16329855-16329944,
           16330343-16330477,16330579-16330635,16331079-16331135,
           16332299-16332336,16332532-16332601,16332971-16333207
          Length = 710

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
 Frame = -1

Query: 352 VAVSLTEVHEGET-TLSYRGFCFSLIEVL-GA*SDGPWLLLSLIEXXXXXXXXXXXFDCI 179
           +AVSL  +    T TLS   F     E L G  S+  W LLS I               I
Sbjct: 97  IAVSLAALLACTTCTLSMPLFSGRFFETLIGRGSEPLWRLLSKIAVLYTLEPIFTIVFVI 156

Query: 178 YITVISNIIFHSYLKAIGLTRLVSNIIFHNRHRNSGVPGTEKCDIISLSFAIDVPFAVL 2
            +TVI   +       I    L+  ++F +RH+   + G    D+ +L   I     +L
Sbjct: 157 NMTVIWEKVMARLRSQIFRRILIQKMVFFDRHKVGELTGLLTSDLGTLKSVITGTLCIL 215


>03_02_0985 -
           12961787-12961984,12963177-12963337,12965332-12965489,
           12966015-12966105,12966715-12966752,12966994-12967154,
           12967249-12968687,12968815-12969227,12969630-12970987,
           12971089-12971454,12971533-12971696,12971748-12971820,
           12972967-12973113
          Length = 1588

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 42  IISHFSVPGTPLFLCLLWKMIFETNRVNPIAFKYE 146
           I+++FSVPG  L   L   ++  TN+V P+  K+E
Sbjct: 251 IMTYFSVPGGFLLSPLHGNILKLTNKVTPLVNKWE 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,275,650
Number of Sequences: 37544
Number of extensions: 335962
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)