Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32222
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 0.56
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 3.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 3.0
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 3.9
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 25 5.2
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 5.2
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 25 5.2
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 24 6.9
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 24 9.1
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 24 9.1
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 24 9.1
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 27.9 bits (59), Expect = 0.56
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 379 KSAFSXLEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 248
KS S + SG+D F + ++ ++++L GP SP S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 3.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 261 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGVVALPTAYSLPV 115
LH + ED+ + G FL S A R+C + + + + L + + P+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPI 173
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 3.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 3 LQHRLLVLSSPHLTRTVHSHLKWRNAH 83
L+H LL S L + + S LKWRN H
Sbjct: 369 LRHELL---SAGLQKAIDSLLKWRNRH 392
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 238 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 140
+ PGS +L G A L G G +S+ G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 160 LTGGSGATNSV*LAGDDL-MCFFPCCL*AFRHFR 62
+ GSG + AGDD+ C FP C+ +H R
Sbjct: 14 IDNGSGFIKAG-FAGDDIPKCLFPTCVGRIKHER 46
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 5.2
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 165 RLSLGVVALPTAYSLPVTI*CASSLVVCERSATSGGYER 49
R S +ALP PVTI +SS+V+ TS GY R
Sbjct: 506 RKSEWAMALPMENESPVTISLSSSVVLV---CTSAGYVR 541
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 24.6 bits (51), Expect = 5.2
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 222 FLPSYAGGRLCMVVAGTLKRLSLGVVALPTAYSLPVTI 109
++PS AGG C+ ++ K L + + + + +P I
Sbjct: 388 YIPSIAGGIACVAMSWDHKIGELAAIIIASNFGIPFII 425
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 246 EDSWAPGQFLPSYAGG 199
+D APG F PS+ GG
Sbjct: 125 DDGAAPGGFAPSFRGG 140
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 318 VRRQARRFWNLGRLVVDPLLHHNCEDS 238
V R A++F N +LVVDP++ DS
Sbjct: 122 VARSAKKF-NFSKLVVDPVMVATSGDS 147
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 23.8 bits (49), Expect = 9.1
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 8 ASTTSVKFTSPHPHRS*PPEVAERSQTTREEAHQIVTGKLYAVGSATTPSERRLSVP 178
AS V+ T+P+ ++ P V E TT + ++ + +L V PS+ S+P
Sbjct: 118 ASKAIVRCTTPYAVKAIVPSVLESIHTTGKWNEKMNSLQLLDVLVEVAPSQLSYSLP 174
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 23.8 bits (49), Expect = 9.1
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -1
Query: 373 AFSXLEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLG--PGSVSTILCGR 200
AF+ P SGS E P+ + + TS L G PG+V IL G
Sbjct: 303 AFTTTVPASGS-VSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGTVPGTVEVILPGP 361
Query: 199 AALYGG 182
+ +Y G
Sbjct: 362 STIYSG 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,672
Number of Sequences: 5004
Number of extensions: 30261
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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