Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32222
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0090 + 13493311-13494180                                         27   6.5  
01_06_0922 - 33022709-33023545                                         27   6.5  
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76...    26   8.6  
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982...    26   8.6  
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683...    26   8.6  
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499...    26   8.6  

>12_02_0090 + 13493311-13494180
          Length = 289

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 86  TTREEAHQIVTGKLYAVGSATTPSERRLSVPATTIQSRP 202
           TTR  +  + T    A    T PS   + VPATT   +P
Sbjct: 75  TTRRPSAVVATSTPTAPSQTTAPSLATILVPATTSAPKP 113


>01_06_0922 - 33022709-33023545
          Length = 278

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 71  AERSQTTREEAHQIVTGKLYAVGSATTPSERRLSVPATTIQSRPP 205
           A  S   R E       +  +  +  TP +RR + PA ++Q +PP
Sbjct: 164 ASASPPPRREQRDRSVRRSPSPAAKRTPEQRRAASPAPSLQRKPP 208


>09_01_0042 +
           764349-764763,764853-764902,765096-765172,766179-766236,
           767481-767607,768665-768769,768842-769424,769470-769775,
           770048-770139,770391-770440
          Length = 620

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 355 PFSGSDFDFLTEGTTPSSAVLEPGPF 278
           P SGS F+FLTE T  S     PG +
Sbjct: 357 PVSGSPFNFLTETTIGSRIDQVPGGY 382


>07_03_0172 +
           14697741-14697869,14697878-14697998,14698134-14698226,
           14700888-14700946,14701003-14701599,14702813-14703020,
           14703102-14703178,14703263-14703302,14703413-14703473,
           14704120-14704189,14705014-14705235
          Length = 558

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 107 QIVTGKLYAVGSATTPSERRLSVPATTIQSRPPA*DGRN*PGAQE 241
           +I T +LY  G   T      ++PAT  ++ P   DG+N P  +E
Sbjct: 135 RISTNQLYNSGIPVTVPSPLPAIPATLDENIPRIPDGQNVPRERE 179


>06_01_0893 -
           6834350-6834464,6835042-6835218,6835301-6835350,
           6836348-6836416,6836495-6836593,6836681-6836759,
           6837604-6837704,6838645-6838713,6839548-6839588,
           6839793-6841159,6841472-6841575,6841914-6842351,
           6843040-6843567
          Length = 1078

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 65  EVAERSQTTREEAHQIVTGKLYAVGSATTPSERRLSVPATTIQSRPPA*DGRN 223
           +V+  S     + + I TG+  + GSA + S   LS+  +T ++ P   + RN
Sbjct: 424 KVSTPSNFGHSDPYGITTGQTGSQGSAVSGSFGELSISTSTSENLPVIHESRN 476


>01_06_1413 +
           37149038-37149295,37149392-37149603,37149687-37149951,
           37150099-37150407
          Length = 347

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 305 LGGFGTWAV*L*IPFYITIVRILGPRVSFYHPMRA 201
           +GG+  W+    IP+ +  V ++ P V+++ PM A
Sbjct: 142 MGGYVAWSCLNYIPYRLAGVALVVPAVNYWWPMPA 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,553,957
Number of Sequences: 37544
Number of extensions: 259014
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)