Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32220
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 157 9e-40
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 57 2e-09
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 57 2e-09
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 47 1e-06
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 47 1e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 0.90
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 25 4.8
SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 25 8.4
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 157 bits (381), Expect = 9e-40
Identities = 72/161 (44%), Positives = 98/161 (60%), Gaps = 1/161 (0%)
Frame = +3
Query: 12 MATDNLTALLYKPNDLRLVQTPIPEISDD-EVLLRMDCVGICGSXVHYWXXGQCGHFVLE 188
MA +L K D + P ++DD +V + + GICGS VHYW G G F+L+
Sbjct: 1 MAPAEKAFVLRKKMDTAIEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILK 60
Query: 189 XPMIMGHXASXXVAXIGSKVXNLTVGDRVAIXPGVPCRYCEFCKTGRYHLCPDMIFCATP 368
PMI+GH ++ V +G V +L GD VA+ PG CR C++C++GRY+LCP M F ATP
Sbjct: 61 KPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATP 120
Query: 369 PVHGNLVRYYKHAXDFCFKLPDHVTMEERALLEPLAVGIHA 491
P G L YY DFC KLP +++EE AL EP++V +HA
Sbjct: 121 PYDGTLRTYYITTEDFCTKLPKQISVEEGALFEPMSVAVHA 161
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 56.8 bits (131), Expect = 2e-09
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = +3
Query: 48 PNDLRLVQTPIPEISDD-EVLLRMDCVGIC-GSXVHYWXXGQCGHFVLEXPMIMGHXASX 221
P ++++ + P P I+ +V+++ IC GS H + G +E I+GH +
Sbjct: 45 PLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPG---IEKGAILGHESCG 101
Query: 222 XVAXIGSKVXNLTVGDRVAIXPGVPCRYCEFCKTGRYHLC 341
VA G +V NL +GDRV I + C C FCK Y C
Sbjct: 102 IVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAAC 141
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 56.8 bits (131), Expect = 2e-09
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Frame = +3
Query: 48 PNDLRLVQTPIPEISDDEVLLRMDCVGICGSXVHYWXXGQCGHFVLEXPMIMGHXASXXV 227
P +++ + P+ E DEVL+ + G+C + +H + P+I GH + V
Sbjct: 18 PENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDW--PLPAKMPLIGGHEGAGVV 75
Query: 228 AXIGSKVXNLTVGDRVAI-XPGVPCRYCEFCKTGRYHLCPDMIFCATPPVHGNLVRYYKH 404
+G+ V L +GDRV + C CE+C +CP I + V G Y
Sbjct: 76 VKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPH-IQLSGYTVDGTFQHYCIA 134
Query: 405 AXDFCFKLPDHVTMEERA 458
+P+ V +E A
Sbjct: 135 NATHATIIPESVPLEVAA 152
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 47.2 bits (107), Expect = 1e-06
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 192 PMIMGHXASXXVAXIGSKVXNLTVGDRVAIXPGVPCRYCEFCKTGRYHLC 341
P+++GH + V IG V N+ GD V + C+ C+FC++G+ +LC
Sbjct: 64 PIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLC 113
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 47.2 bits (107), Expect = 1e-06
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 192 PMIMGHXASXXVAXIGSKVXNLTVGDRVAIXPGVPCRYCEFCKTGRYHLC 341
P+I+GH + V +G +V + VGD V C+ C+FCK+G+ +LC
Sbjct: 67 PVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLC 116
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 0.90
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 443 GHVIRKLEAKIGCVLVISDEVSVYWGRGAED 351
GH ++ +EAK G + I + SV G+G D
Sbjct: 211 GHTLKDMEAKSGAKIAIRGKGSVKEGKGRSD 241
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 320 DRTIPPMPRHDLLRHAPSTRK 382
+R +PP P LL AP+TR+
Sbjct: 167 NRVLPPYPEPALLPEAPNTRE 187
>SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 44
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 306 CEFCKTGRYHLCPDMI 353
C F K G YH+C MI
Sbjct: 27 CVFSKNGFYHVCNKMI 42
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 394 YLTRFPCTGGVAQKIMSGHRWYRPVL 317
YL R G+ +KIM HRW P+L
Sbjct: 128 YLERLRDDTGI-KKIMDSHRWTVPLL 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,826
Number of Sequences: 5004
Number of extensions: 30210
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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