Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32219
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0645 - 19562886-19564484                                         30   0.93 
12_02_0428 - 18980002-18980075,18980201-18980434,18980508-189805...    27   8.7  

>10_08_0645 - 19562886-19564484
          Length = 532

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 44  HTAHPMVIGYRRPWTSAMPGAEPSLVSTRTVTGVKTHYAT 163
           HTAH   +G R  WT+A P  +      R V  V+ H  T
Sbjct: 115 HTAHDAFLGARLAWTNAGPAGDGGGGRERLVLRVRRHDRT 154


>12_02_0428 -
           18980002-18980075,18980201-18980434,18980508-18980594,
           18981843-18981907,18982132-18982220,18982291-18982636,
           18984011-18984019,18984378-18984544
          Length = 356

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 155 YATLNFAHATLLNFLLVVGPLVSPH 229
           +A  NF+  TL +FLL   PL+ PH
Sbjct: 112 FALKNFSLTTLRSFLLYYLPLLEPH 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,107
Number of Sequences: 37544
Number of extensions: 268239
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)