Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32216
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    56   4e-09
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    29   0.32 
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   5.1  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   5.1  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   6.8  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   6.8  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 55.6 bits (128), Expect = 4e-09
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
 Frame = +3

Query: 213 GQLQGRIVNSPSGKA-FYSFQGIPYAKPPLGSLRFKAPQSPEP-WDGIRDATAEGNVCAQ 386
           G L G  V   +GK   + F GI YAKPP+G LR++ P + E  +D   D      +C Q
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61

Query: 387 ------IDPVFAKSYVGDENCLFLNVYTPSTD--GAFLPVMIWIHGGGFKWG 518
                  + V    +  DE+CLFLN++ P+ +      PV+ +IHGG  + G
Sbjct: 62  PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVG 113


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 279 PYAKPPLGSLRFKAPQSPEPWDGIRDATAEGNVCAQIDPV 398
           P   P  G      P+SP  + G+ DA+ EGN    ID +
Sbjct: 3   PSTPPMRGLCTPSTPESPGSFKGVIDASLEGNSSIMIDEI 42


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 355 MPRRKGTCVLKSIQSSRNPMSAMKTAC 435
           +PR  G CVL      RNP S +  +C
Sbjct: 431 LPREWGYCVLDEGHKIRNPDSEISISC 457


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 336 PWDGIRDATAEGNVCAQIDPVFAKSYVGDENCLFL 440
           P + IRD     N   ++DP FAK+YV     LF+
Sbjct: 449 PAECIRDC----NKAIELDPNFAKAYVRKAQALFM 479


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 473 ECSISARGVH-V*EQAVFIADIGFREDWIDLSTHVPF 366
           EC  S  GV  + +   FI+  GF E W      +PF
Sbjct: 137 ECQFSEGGVFALLQNDTFISITGFEEPWRKTYASIPF 173


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 157 RNSFTADIIVGNSLFTPELLIKILFNSLHRCFIHS-LHS*LRKSG 26
           RNSF +  I+GN L     +  + FN +   ++   L S LRK G
Sbjct: 248 RNSFNSVQIMGNDLLQDPRVTVLQFNPIAPTYMKKCLGSILRKEG 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,773
Number of Sequences: 5004
Number of extensions: 53109
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)