Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32213
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 33 0.15
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 33 0.15
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 30 0.81
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 30 1.1
04_04_0658 + 27006245-27006305,27006447-27006523,27006798-270072... 28 3.3
12_02_0307 - 17311673-17312032 28 4.3
08_02_0602 + 19183549-19184919 28 4.3
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 27 5.7
08_01_1010 - 10215625-10216335,10216372-10216473 27 5.7
01_06_0696 + 31296016-31296141,31296197-31296295 27 5.7
05_07_0167 + 28115290-28115349,28115952-28115996,28116087-281161... 27 7.5
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 27 7.5
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 27 7.5
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934... 27 10.0
04_04_1542 - 34264994-34265331,34266195-34267029 27 10.0
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 27 10.0
03_01_0298 + 2318836-2319051,2321238-2323106 27 10.0
01_06_1217 + 35485182-35485949 27 10.0
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 170 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQP 271
P A M ++HQ P PP+ +P ++P V P P
Sbjct: 45 PGAAAMVMQHQMAPAPPQFAPHFVPFHAVGPPPP 78
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 209 PKPPELSPIYLPVSP-VMPVQPLTSLTL-TQTASGPE 313
P+PP+ SPI++P SP P P +SL T TA P+
Sbjct: 69 PRPPQSSPIFVPDSPNPSPAAPTSSLASGTSTARPPQ 105
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 30.3 bits (65), Expect = 0.81
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 169 ASQGDYASQASAVAQTAGIIAHLSAGIPG 255
A G AS+ + V +T G+++ +S+G+PG
Sbjct: 99 APAGRAASKGAGVGETLGVVSRVSSGVPG 127
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 116 TPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPV 256
TPT PSST S P + KHQ+ P PP + + P PV
Sbjct: 83 TPTPPPPSSTASSS---LPPPTPLLPKHQQAPPPPPPTQSHQPPPPV 126
>04_04_0658 +
27006245-27006305,27006447-27006523,27006798-27007225,
27007614-27007882,27007966-27008249
Length = 372
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 229 AHLSAGIPGDACAAANVINSYTDGVRSGNFAGFXQSLGPFF 351
+ G+PG +C+ A +N+ ++G + AG +++ P F
Sbjct: 168 SRFGVGVPGYSCSNATKVNATSEGEKPELPAGDGEAVAPVF 208
>12_02_0307 - 17311673-17312032
Length = 119
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 170 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 310
PA A + V RWP+PP +L + + P T + SGP
Sbjct: 66 PAHAQVAVDGARWPRPPRHPARHLTLPLCLRRVPPTQQPPHRPGSGP 112
>08_02_0602 + 19183549-19184919
Length = 456
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 193 QASAVAQTAGIIAHLSAGIPGDACAAANVINS 288
QA+A + + A L AG+ DACA +V +S
Sbjct: 192 QAAAAGASGSVAAALPAGVLDDACADLDVTSS 223
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 176 RATMQVKHQRWPKPPE--LSPIYLPVSPVMPV 265
R + H R P PP LSP+ LP+ P PV
Sbjct: 454 RMKCKYHHPRSPVPPAGALSPLGLPIKPDQPV 485
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 107 TSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSP 253
T TP + + S + S T P RA P P SP Y P+SP
Sbjct: 150 TPSTPQRHAASPDYTPSTPTPPRRAASLDYTPSTPPPRAASPDYTPLSP 198
>01_06_0696 + 31296016-31296141,31296197-31296295
Length = 74
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 162 GHGQPGRLCKSSISGGPNR 218
GHG+P L +SSIS P+R
Sbjct: 16 GHGRPALLTRSSISSEPHR 34
>05_07_0167 +
28115290-28115349,28115952-28115996,28116087-28116179,
28116259-28116342,28116949-28117131,28117234-28117276,
28117671-28117891,28118060-28118137,28118404-28118529,
28118616-28118825
Length = 380
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 56 ATLMMEKLVP*SHVHGTTSMTPTKASPSSTFKRS 157
A ME +P SH+ G+T++ P + P+ + S
Sbjct: 175 AAAKMENALPPSHILGSTAILPNHSFPAQVIRPS 208
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 400 PGQLRYSVGPTLGCAGGGRIY 462
PGQ Y VGP++G G I+
Sbjct: 994 PGQWEYQVGPSVGIEAGDHIW 1014
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 40 DNEIPRDIDDGKASSVISRAWDYVDDTDK--SIAILNVQEILKDMA 171
+N P D+ +G + +I+R V +TD+ ++ + +I++D+A
Sbjct: 459 ENNTPEDVAEGNLNELINRNMLEVVETDELGRVSTCKMHDIMRDLA 504
>10_08_0506 +
18390892-18391373,18392699-18392798,18393152-18393485,
18393756-18393868,18394437-18394565,18394746-18394839,
18394942-18395025,18395265-18395896,18396662-18396951,
18397098-18397242,18397876-18397973,18398075-18398156,
18398607-18398612,18398845-18398928
Length = 890
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 178 GDYASQASAVAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRS 309
GDYA A+A A A + + A G+ + + N DG+R+
Sbjct: 87 GDYAEPATAAAAAAAATSLMEAEEYGEMMESVDEANFALDGLRA 130
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 154 ILKDMASQGDYASQASAVAQTAGIIAHLSAGIP 252
+L+D DY S+ +A A T G A SA +P
Sbjct: 138 LLRDYKKVRDYESRVAAAAATGGAAAANSAPLP 170
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 26.6 bits (56), Expect = 10.0
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Frame = -1
Query: 452 PPPAQPRVGPTE-YRSXPGLVXS*XIRFKFCPTCPKKGPRDCXKPAKFPDLTPSV*ELMT 276
PPP+ P VGP + PGL + P P G C P P P T
Sbjct: 237 PPPSLPGVGPPRGGGAIPGLPAGFPFLLRPPPPLPVPGV-ICRPPPSPPYFAPPPRATPT 295
Query: 275 LAAAQASPGIPADRWAI 225
++ A PG R I
Sbjct: 296 VSLAGPPPGFNPKRGLI 312
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 76 LFHHQCRVEFHYHCI 32
LF +C EFH+HCI
Sbjct: 89 LFTAECSHEFHFHCI 103
>01_06_1217 + 35485182-35485949
Length = 255
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 104 TTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPV 265
+T++ ASP +F S +A + H P PP+L P P SP + V
Sbjct: 23 STALAAAAASPRLSFS-SPSLKDLQALLLSDHSPSPTPPQLPPNTAPCSPSVRV 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.133 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,036,688
Number of Sequences: 37544
Number of extensions: 262247
Number of successful extensions: 710
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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