Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32212
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 31 0.46
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 29 1.8
06_03_0685 - 23499779-23500204 28 2.4
04_03_0489 + 16503325-16503747,16503916-16503978 28 3.2
10_08_0173 + 15414628-15414890,15415001-15415074,15416322-154164... 27 4.3
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 27 4.3
03_05_0057 + 20350971-20351405 27 4.3
01_01_1225 - 9894899-9895333 27 4.3
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 27 5.6
09_02_0425 + 9167684-9167803,9168034-9168108,9168200-9168653,916... 27 5.6
05_03_0408 + 13601576-13601748,13601795-13602104,13602597-136028... 27 5.6
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644... 27 5.6
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 27 7.5
08_02_1499 - 27558872-27559015,27559544-27559666,27560214-275603... 26 9.9
05_03_0150 - 8953545-8954024 26 9.9
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 26 9.9
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 30.7 bits (66), Expect = 0.46
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 315 AERLLPGALRDAPSPE*TFSTCLVSTESTPFS 220
++RL+ ALR PSP F++ L +TPFS
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPFS 70
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 306 NAQLC-RLRTPSVSRCAWAPGLCGGPDVP 389
NA C R P V+ +WAP CGG VP
Sbjct: 75 NAWNCPRNSRPPVAALSWAPARCGGGAVP 103
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 237 PSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAP 362
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 297 PAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 404
PAA A L RLRTP+ + C G P V H A
Sbjct: 49 PAAAACLRRLRTPATAACLRRAGNPRPPPVSPHKGA 84
>10_08_0173 +
15414628-15414890,15415001-15415074,15416322-15416401,
15417186-15417231,15417334-15417368,15417751-15417771,
15418418-15419133,15419292-15419324,15419517-15419813,
15420213-15420659,15420738-15420886,15421408-15421697,
15421774-15421898,15422006-15422156
Length = 908
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 60 LQXIRHEAQFRCGLTVCAVIFPPSY 134
L+ +RHEA G+ VCAVI PSY
Sbjct: 501 LRALRHEALQ--GVNVCAVIHQPSY 523
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 226 WCGLRRDQTGREG 264
WCGLRR + GR G
Sbjct: 67 WCGLRRSKAGRRG 79
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 287 LSAPGSKRSALSASDAECFSLCLGAGP 367
LS+P + R AL D EC S AGP
Sbjct: 74 LSSPKAAREALKVHDPECCSRSPSAGP 100
>01_01_1225 - 9894899-9895333
Length = 144
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 405 VQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGA 292
V + + H+ H R P+P + K S ++A A R LP A
Sbjct: 55 VVAAHRRHRRHRRSPSPPDA-KRSTADATVAPRFLPAA 91
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 399 SREQGHQDHHRGPAPRHSEKHSASEADRAERL 304
S +GH +HHR + A E DR + L
Sbjct: 50 SSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81
>09_02_0425 +
9167684-9167803,9168034-9168108,9168200-9168653,
9168735-9168784
Length = 232
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 297 PAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 404
P Q R P++ RC+W P L PA S+
Sbjct: 82 PTRRGQQQRRHAPALRRCSWEPLLALAAAAPARDSS 117
>05_03_0408 +
13601576-13601748,13601795-13602104,13602597-13602834,
13603014-13603364,13603457-13603542,13603685-13603759,
13604241-13604542,13605359-13605622,13606032-13606806
Length = 857
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 231 WTPSRPNRSRRFIPVTG 281
+ P+RP R RRF+P+ G
Sbjct: 716 YPPNRPTRCRRFVPLPG 732
>04_01_0490 -
6440176-6440448,6440785-6441074,6441156-6441304,
6441432-6441890,6441973-6442269,6442604-6443502,
6443793-6443827,6443984-6444078,6444184-6444247,
6446099-6446175,6446330-6446514
Length = 940
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 60 LQXIRHEAQFRCGLTVCAVIFPPSY 134
L+ +RHEA G+ VCAV+ PSY
Sbjct: 530 LRALRHEALE--GVNVCAVVHQPSY 552
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 381 QDHHRGPAPRHSEKHSASEA 322
+DHHR PR + SASEA
Sbjct: 714 EDHHRSKRPRTTTTSSASEA 733
>08_02_1499 -
27558872-27559015,27559544-27559666,27560214-27560312,
27561257-27561307
Length = 138
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 401 RAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSET 282
+AV + + T AR+ G A +P P +VCC + ET
Sbjct: 17 KAVKTNSISFTSARK-GNAFLRLQPVPMRFAVCCAAKKET 55
>05_03_0150 - 8953545-8954024
Length = 159
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 221 ENGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASD 331
E+G D + V + +G+ AS++APG + L A D
Sbjct: 50 EHGDDIAVRRPVAGIGAGEEASVAAPGEHGAPLGAFD 86
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 365 ARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 225
AR P R+ P+ + + +R TP R KPS P RSP H
Sbjct: 242 ARSPPLRRDV--PELFKEAKSSSKRFSTPPPRRKPSSPPAPSRSPPH 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,427,499
Number of Sequences: 37544
Number of extensions: 247742
Number of successful extensions: 880
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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