Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32212
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical p...    30   0.73 
Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical pr...    29   0.96 
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    28   2.2  
AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever sho...    28   2.9  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    28   2.9  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF098992-8|AAC67454.2|  239|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    27   6.8  
AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    26   9.0  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    26   9.0  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    26   9.0  

>Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical
           protein K10C8.3b protein.
          Length = 141

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -3

Query: 401 RAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 225
           R  S+ ++  +  +RP + R ++ P P       R RS +   + K +  V     P+H
Sbjct: 17  RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75


>Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical
           protein C01F6.5 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -1

Query: 388 GTSGPPQRPGAQAQRETLGVRS 323
           GT+GP +RP AQ +R++ G+R+
Sbjct: 38  GTAGPSRRPTAQPRRQSGGIRT 59


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 372 HRGPAPRHSEKHSASEADRAERLLPGALRDAP-SPE*TFSTCLVSTESTPFSIV 214
           H GP     E+H  +E D  E LL G L D P S E  F    +S   T F++V
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSDEEPFQQ--LSGNDTCFAVV 308


>AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform b protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 20  RGGGRSITSGXPRAAGNSARGAIPLRPNGLRRNFSPKLFSRLNYVSPR 163
           R GG   T G    A     GAI  RP G RR  +  + S  + + P+
Sbjct: 166 RPGGNHYTRGFNERASMRGDGAIARRPQGSRRQRNDSINSTQSEMPPQ 213


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 20  RGGGRSITSGXPRAAGNSARGAIPLRPNGLRRNFSPKLFSRLNYVSPR 163
           R GG   T G    A     GAI  RP G RR  +  + S  + + P+
Sbjct: 166 RPGGNHYTRGFNERASMRGDGAIARRPQGSRRQRNDSINSTQSEMPPQ 213


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 384 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*T 262
           +  HH+ P P H   H   +  +  E++   ++ DAP  + T
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPETKPT 261


>AF098992-8|AAC67454.2|  239|Caenorhabditis elegans Hypothetical
           protein F53C3.3 protein.
          Length = 239

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 20  RGGGRSITSGXPRAAGNSARGAIPLRPNGLRRN 118
           RGGG S  SG  R++ +S RG      +  R+N
Sbjct: 41  RGGGGSFRSGGARSSSSSFRGGSSHYSSSFRQN 73


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 377 TTTEARRPGTARNTRRPKPTELSVCCRERSETP 279
           TTT  +RP T   T  P+P E     +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194


>Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical
           protein K04B12.3 protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 380 RTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSR 255
           R  T A+RPG  R   R K +E  V  R + E      KP +
Sbjct: 352 RLYTNAQRPGERRGADRFKDSEKPVKIRSKEEHLMRVEKPKK 393


>U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical
           protein ZC13.3 protein.
          Length = 732

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 359 RPGTARNTRRPKPTEL 312
           RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 377 TTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHF 222
           T+TE   P     + RP  T+L+V     ++TP H N+P  P  ++ SP  F
Sbjct: 263 TSTETSSPFFLDQSVRP--TQLAVASSFPAQTPLH-NEPLPPPVTQNSPSIF 311


>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 221 ENGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPLWW 376
           ENG ++   + +EKVY+GD   +    ++  A +   A+       +GP+ W
Sbjct: 217 ENGFETETREVLEKVYNGDKEWVEYEMAEIIAFNEDQAKENEKAHASGPVIW 268


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 20  RGGGRSITSGXPRAAGNSARGAIPLRPNGLRR 115
           R GG   T G    A     GAI  RP G RR
Sbjct: 166 RPGGNHYTRGFNERASMRGDGAIARRPQGSRR 197


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 406 GAEP*AGTSGPPQRPGAQAQ 347
           G +   G SGPP RPGA  Q
Sbjct: 205 GGDAPPGPSGPPGRPGAPGQ 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,533,482
Number of Sequences: 27780
Number of extensions: 188833
Number of successful extensions: 828
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)