Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32211
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    28   0.99 
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    25   9.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.2  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   9.2  

>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 20  NIPRCDSSLPGDLLHTVCSQARSPDPG 100
           N  R    L G  LHTVC +A+ P+ G
Sbjct: 83  NFNRIKHDLRGSHLHTVCEEAKCPNIG 109


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 111 TYGRPGSGDLA*LHTV*SRSPGKELSHRGMFG 16
           T   PGSGDL  +  V     G E +H G  G
Sbjct: 39  TASAPGSGDLPKVTLVSGGGSGHEPTHAGFVG 70


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 296  LLC-VMERIINTELLKYFEDHQLISDRQYSFSGLFGSLRFLRIF 424
            L+C V   ++NT L  Y  D  L + +  S    FG+   L+IF
Sbjct: 931  LVCAVKSTVLNTTLRIYEADRALKNKKTQSLKKPFGNQATLKIF 974


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 206 LQDSVFMEDCPRYPQEGSNPSSYRPVVINSLLC 304
           L +   + +CP+YP+  S  SS    ++ SLLC
Sbjct: 232 LTEQKIINECPQYPETLSKNSS---SLLKSLLC 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,599
Number of Sequences: 5004
Number of extensions: 51207
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)