Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32206
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    32   0.069
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.64 
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    28   1.1  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    28   1.1  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    28   1.1  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   2.0  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   2.0  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   4.5  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.0  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   6.0  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 444 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 602
           I VE    QPEDSK T+V      +S +EK +    + S D  A + +++  +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 399 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 569
           AK S   D   K +  K  + A+ PE SK  V+       KEE  S +++E S+  +
Sbjct: 41  AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
 Frame = +3

Query: 414 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP---SATDAEGSADSAAIIPN 584
           + ++ +KS+ + V+  +  P+ S  + QA   E      P   S T+    A  A +  +
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANK-QAKEMESKMSNSPTQKSKTEENNQAVRAILDAS 585

Query: 585 --MVKKIDL----APTVESDAAAVPEIKTP 656
             M K+ DL     PT ++++A+VP+I  P
Sbjct: 586 ATMEKQYDLHRLPTPTSQTESASVPQIANP 615


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 25/75 (33%), Positives = 35/75 (46%)
 Frame = +3

Query: 474 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKT 653
           E+S   +    +E+SK  KP+ TD            N  K+I++A    S  A  P+  T
Sbjct: 33  EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82

Query: 654 PEAADAPKLADNPVD 698
           P AA AP  A + VD
Sbjct: 83  P-AAVAPVEATSAVD 96


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = +3

Query: 447 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 626
           +VEE  A+   S         E S   KPSA  AE   D    I   V  I L    +  
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347

Query: 627 AAAVPEI---KTPEAADAP 674
           +    E+   KTP   DAP
Sbjct: 348 SETDSEVAATKTPATEDAP 366


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 402 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 578
           K S+ P+ +  +    KVEEP+ + ++   + + TV +  +E+ P        A S    
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505

Query: 579 PNMVKK 596
              VKK
Sbjct: 506 SEDVKK 511


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 454 KNQLLSLKIQKLKYKLPSLKFQKKKNL 534
           KN LLS KI +  Y+  S+++QK KN+
Sbjct: 40  KNGLLSPKITQRFYQNSSIQYQKDKNI 66


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 338 VFWGYIVLFGLWYSGYLVVTNW 273
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 507 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAVPEIKTPEA 662
           A   K+ +PS  +   +A   +  PN VK +  D+ P   +      +I  PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 420 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 566
           D   +   I  E PA    + K   +  + + S  E+PS T  EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +3

Query: 405  SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 572
            SS   DA AKS   +  EPA +P +   + ++T     + EK + TD   +        A
Sbjct: 898  SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956

Query: 573  IIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVD 698
             + + V + ++  +V     +      P++   PK  +   D
Sbjct: 957  DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSD 998


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 426 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 563
           ++K  + KVEE  ++  D K +   ++    KEEK   TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 423 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 560
           AEA + D   + P       K  V  +VAE  ++E  +  ++E  A
Sbjct: 76  AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,618
Number of Sequences: 5004
Number of extensions: 33454
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)