Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32201
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    29   0.56 
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   3.9  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   5.2  

>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 447 CVWPNNV-TYKNCF*YRFSILTVKPKTIKVND 539
           CV PN V  +KN +    S LT K KTIKV D
Sbjct: 298 CVCPNRVYVHKNVYDEFVSKLTEKVKTIKVGD 329


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 101 MRGLLKLKLCAIKNTNYAIGNLRSKKKKLETSY 3
           M G++ L  C I   +YA  N+ S K KL T Y
Sbjct: 287 MSGVVSLLFCGITLKHYAFFNM-SYKAKLSTKY 318


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 377 DYPLVASCFKIGV*LHVNNS 318
           DYP V +C  +GV LH ++S
Sbjct: 315 DYPQVMACADLGVCLHTSSS 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,596
Number of Sequences: 5004
Number of extensions: 34163
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)