Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32201
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
 Frame = -3

Query: 560 FLLISNIIVYFYCFWF-----NCQN*KSILKAIFISYVIRPNASS*LCMTSLGVKIHYEL 396
           F+L+  I V  Y F       N +N     + IF  Y +   +   +      ++     
Sbjct: 90  FILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGVH 149

Query: 395 KL*HYNDYPLVASC 354
            L  YND P+ ASC
Sbjct: 150 SLSDYNDKPIPASC 163


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 626 GFMSTVIKKKEPISKRY*L*SYFLLISNIIVYFYCFW 516
           G++S  + KKEP  K   + +  +++  ++V +  FW
Sbjct: 77  GYLSPEVLKKEPYGKPVDIWACGVILYILLVGYPPFW 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,576
Number of Sequences: 438
Number of extensions: 2578
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)