Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32197
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    27   0.57 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   1.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   4.0  
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    24   7.0  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   9.2  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   9.2  

>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 29  AIKKKKVEMYSTVVVS-ARNNIIYPLLFSSTYTINFEGLYQIRRASK*AHGALTRG 193
           A+K+KK+     V +  +RNNI   L       +NFE L  +R+ ++ A  ++ RG
Sbjct: 63  ALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAE-AMKSIQRG 117


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 189  EVVANTSPSKP*PFTLLVVGPLV 257
            ++V  T PSK  PF   + GPL+
Sbjct: 2269 DIVLKTEPSKLRPFVTQITGPLI 2291


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 70  YYSRIHFYFFFFYCLGGWTS 11
           Y SR+ F +FF Y L  W S
Sbjct: 435 YASRVRFDYFFLYDLKLWKS 454


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 37  KKKSRNVFYCSSEC 78
           KKK+R V + SSEC
Sbjct: 131 KKKTRQVIFTSSEC 144


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 58  IHFYFFFFYCL 26
           +HF FFFF C+
Sbjct: 153 LHFLFFFFLCV 163


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 1   WAVNSSTHLSNKKKKSRNVFYCSSECSKQYNLSPFIFFYL 120
           + + SSTHL N    SR     +   S+QYN S  +F YL
Sbjct: 471 YQIMSSTHLKNLFFCSRKGIALTKLHSQQYNEST-LFQYL 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,232,437
Number of Sequences: 5004
Number of extensions: 18867
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)