Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32197
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1461 - 27299891-27301870 29 1.2
02_02_0547 + 11399769-11399852,11399906-11400088,11400474-114005... 29 1.2
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438... 28 1.6
04_04_1683 + 35345506-35345581,35346171-35346343,35346706-353467... 27 3.7
02_03_0204 - 16369800-16371758,16372260-16372331 27 3.7
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 27 4.9
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 27 4.9
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 26 6.4
03_06_0696 - 35603763-35603941,35605272-35605737 26 6.4
>08_02_1461 - 27299891-27301870
Length = 659
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 313 KRLFRGRNRQGGGTYPRGL 257
K+L RGR R GGG + RGL
Sbjct: 288 KKLLRGRRRGGGGGHRRGL 306
>02_02_0547 +
11399769-11399852,11399906-11400088,11400474-11400578,
11400690-11400773,11400938-11401053,11401158-11401259,
11401339-11401452,11401540-11401596,11401681-11401873,
11402261-11402335,11402425-11402460,11402509-11402574,
11402575-11402688
Length = 442
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 327 HRSNRNDCFAAEIGRVVVPTRADSQEVLPP 238
H N +D + E+ ++ VPT E LPP
Sbjct: 75 HNKNNSDSTSEEVPKIYVPTNPKGAERLPP 104
>08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,
4381944-4382047,4382127-4382259,4384477-4384653,
4385164-4385309,4385536-4385625,4385703-4385915,
4386090-4386182,4386743-4386937,4387018-4387110,
4387924-4388019,4388556-4388985,4389424-4390091,
4392074-4392271,4392690-4393407,4394036-4394181
Length = 1628
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 124 SIGRRK*KGINYIVSSTHYYSRIHFYFFFFYCL 26
++GR +G+ VS H YSR HF+F F L
Sbjct: 1033 AVGRTACRGVTVPVS--HIYSRNHFFFVFLSIL 1063
>04_04_1683 +
35345506-35345581,35346171-35346343,35346706-35346739,
35346919-35347055,35347356-35347422,35347645-35347744,
35348375-35348538,35349023-35349069,35349177-35349224,
35349463-35349976,35350190-35350278,35350472-35350549,
35350972-35351019
Length = 524
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 41 KKVEMYSTVVVSARNNIIYPLLFSSTYTI 127
K VE+Y+ + +RNN IY ++ YT+
Sbjct: 174 KAVELYTCAIALSRNNAIYYCNRAAAYTL 202
>02_03_0204 - 16369800-16371758,16372260-16372331
Length = 676
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 29 AIKKKKVEMYSTVVVSARNNIIYPLLFSSTYTINFEGLYQIRR 157
++ K+ +EM ST + + NN+ Y L Y F + IRR
Sbjct: 84 SVNKENLEMISTTLEPSYNNLSYHLKLCLLYLSVFPKGHNIRR 126
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 1 WAVNSSTHLSNKKKKSRNVFYCSSECSKQYNLS 99
W N ST L NKKK + + ++ Y+L+
Sbjct: 98 WDKNCSTSLQNKKKGRQGAYDSEEAAARAYDLA 130
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 1 WAVNSSTHLSNKKKKSRNVFYCSSECSKQYNLS 99
W N ST L NKKK + + ++ Y+L+
Sbjct: 101 WDKNCSTSLQNKKKGRQGAYDSEEAAARAYDLA 133
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 59 STVVVSARNNIIYPLLFSSTYTINFE 136
+T+ + N+ YPL++SST + FE
Sbjct: 467 ATINTVTQTNLRYPLIYSSTIKVVFE 492
>03_06_0696 - 35603763-35603941,35605272-35605737
Length = 214
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 224 AFYFTGGRTSCESARVGTTTLP 289
+F++T R +C SA VG LP
Sbjct: 86 SFFYTPARRACRSAAVGVGILP 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,437,526
Number of Sequences: 37544
Number of extensions: 132584
Number of successful extensions: 315
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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