Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32197
         (332 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41371-1|AAA97461.1|  872|Homo sapiens spliceosome associated pr...    30   2.0  
BC053577-1|AAH53577.1|  877|Homo sapiens SF3B2 protein protein.        30   2.0  
BC000401-1|AAH00401.2|  894|Homo sapiens SF3B2 protein protein.        30   2.0  
U71374-1|AAD05572.1|  403|Homo sapiens HsPex13p protein.               28   7.9  
DQ065725-1|ABA00135.1|  125|Homo sapiens immunoglobulin epsilon ...    28   7.9  
DQ065718-1|ABA00128.1|  125|Homo sapiens immunoglobulin epsilon ...    28   7.9  
BC067090-1|AAH67090.1|  403|Homo sapiens peroxisome biogenesis f...    28   7.9  
AJ488540-1|CAD32734.1|  128|Homo sapiens immunoglobulin heavy ch...    28   7.9  
AF048755-1|AAC39844.1|  403|Homo sapiens HsPex13p protein.             28   7.9  
AB022192-1|BAA88907.1|  403|Homo sapiens PEX13 protein.                28   7.9  

>U41371-1|AAA97461.1|  872|Homo sapiens spliceosome associated
           protein protein.
          Length = 872

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 174 TGL*PEVVANTSPSKP*PFTLLVVGPLVSPRG*VPPP 284
           T L P V A   P  P P  L +  P+  PRG  PPP
Sbjct: 194 TPLGPRVAAPVGPVGPTPTVLPMGAPVPRPRGPPPPP 230


>BC053577-1|AAH53577.1|  877|Homo sapiens SF3B2 protein protein.
          Length = 877

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 174 TGL*PEVVANTSPSKP*PFTLLVVGPLVSPRG*VPPP 284
           T L P V A   P  P P  L +  P+  PRG  PPP
Sbjct: 217 TPLGPRVAAPVGPVGPTPTVLPMGAPVPRPRGPPPPP 253


>BC000401-1|AAH00401.2|  894|Homo sapiens SF3B2 protein protein.
          Length = 894

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 174 TGL*PEVVANTSPSKP*PFTLLVVGPLVSPRG*VPPP 284
           T L P V A   P  P P  L +  P+  PRG  PPP
Sbjct: 216 TPLGPRVAAPVGPVGPTPTVLPMGAPVPRPRGPPPPP 252


>U71374-1|AAD05572.1|  403|Homo sapiens HsPex13p protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 263 RTHKRSYHQ*SKRLGLARASVSNDLWLEPRELIY*LG 153
           RT +  Y +  + LGL R S + DLW E    +  LG
Sbjct: 186 RTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLG 222


>DQ065725-1|ABA00135.1|  125|Homo sapiens immunoglobulin epsilon
           heavy chain variable region protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 22  HLSNKKKKSRNVFYCSSECSKQYNLSPFIFFYLYY 126
           H+++ + +   V+YC+ + S  YN    + FY YY
Sbjct: 82  HMNSLRAEDTAVYYCAKDWS--YNYDGALAFYFYY 114


>DQ065718-1|ABA00128.1|  125|Homo sapiens immunoglobulin epsilon
           heavy chain variable region protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 22  HLSNKKKKSRNVFYCSSECSKQYNLSPFIFFYLYY 126
           H+++ + +   V+YC+ + S  YN    + FY YY
Sbjct: 82  HMNSLRAEDTAVYYCAKDWS--YNYDGALAFYFYY 114


>BC067090-1|AAH67090.1|  403|Homo sapiens peroxisome biogenesis
           factor 13 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 263 RTHKRSYHQ*SKRLGLARASVSNDLWLEPRELIY*LG 153
           RT +  Y +  + LGL R S + DLW E    +  LG
Sbjct: 186 RTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLG 222


>AJ488540-1|CAD32734.1|  128|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +1

Query: 25  LSNKKKKSRNVFYCSSECSKQYNLSPFIFFYLY 123
           ++N + +   ++YC+ E  + Y++    +FY Y
Sbjct: 82  MNNLRAEDTALYYCAKEAGRDYDILTGYYFYYY 114


>AF048755-1|AAC39844.1|  403|Homo sapiens HsPex13p protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 263 RTHKRSYHQ*SKRLGLARASVSNDLWLEPRELIY*LG 153
           RT +  Y +  + LGL R S + DLW E    +  LG
Sbjct: 186 RTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLG 222


>AB022192-1|BAA88907.1|  403|Homo sapiens PEX13 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 263 RTHKRSYHQ*SKRLGLARASVSNDLWLEPRELIY*LG 153
           RT +  Y +  + LGL R S + DLW E    +  LG
Sbjct: 186 RTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLG 222


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,776,276
Number of Sequences: 237096
Number of extensions: 740317
Number of successful extensions: 1546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)