Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32188
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    56   5e-09
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    45   6e-06
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    40   3e-04
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    31   0.15 
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    30   0.19 
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   1.4  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   2.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   2.4  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    26   3.2  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   3.2  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    26   4.2  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   5.5  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   7.3  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   9.6  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   9.6  

>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +2

Query: 194 SITNAYKK-PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLW 370
           +I + Y + PV+  +G   +L+D +G++Y+D   G+   S+GH HP+V     DQ   L 
Sbjct: 46  NIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKLV 105

Query: 371 HTTNL 385
           H++NL
Sbjct: 106 HSSNL 110


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +2

Query: 149 SYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHP 328
           S +Q+E ++  Y   +  N +  PV  ++     ++D +G+ YLD       V+ GHCHP
Sbjct: 12  STEQIEVLENEY---AAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHP 68

Query: 329 KVNAALKDQ 355
           K+  AL +Q
Sbjct: 69  KIIEALVEQ 77


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 19/82 (23%), Positives = 36/82 (43%)
 Frame = +2

Query: 218 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLXRHP 397
           P ++ +     +YD      LD   G ++  +GH HP + A ++  L  L H  +    P
Sbjct: 33  PKIIVRAKGCCVYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVHLFSGFLSP 92

Query: 398 KIYEYVEQLCR*APGGFERGIF 463
            + +   +L    P G ++ +F
Sbjct: 93  PVVQLATELSDLLPDGLDKTLF 114


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 218 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLD 361
           P+ +  G+   L D DG  Y D    +     GH +P +  AL    D
Sbjct: 52  PIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFD 99



 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 420 NYAAKLPG---DLNVVYLVNSGSEANELATLLAKAXTGNLDIISL 545
           NYA  L      +  +   NSG+EAN  A + A+  TG   +I++
Sbjct: 114 NYAEALKSRFLSIEKIRFCNSGTEANITAIIAARKFTGKRAVIAM 158


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 200 TNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQ 355
           T+   +P  + +    +LY  DG R +D  GG     +GH + +V  A+  Q
Sbjct: 22  TSPNHRPPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQ 73


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 44  EMANRGT--KLCFDIVRTYSTAKMPPTDF 124
           E+ANR    KLC+ I++    A +PPT+F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 140  TGPSYQQVEQMKGVYMPPSITNAYKKPVLL 229
            +G SY+ V+  + VY+ PS + A KKP ++
Sbjct: 977  SGDSYRTVKSNQTVYIHPSSSVAEKKPKVI 1006


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -1

Query: 458 YHVQIPRELSGIIVXRTHRFSDVXTGWSYATIHRVDL*GLHLLS 327
           ++  +P +LS +       F+     W Y T   +++ G H+L+
Sbjct: 763 FNYDLPEQLSRLKCTSKANFAKKENAWKYTTTSSINIVGRHVLN 806


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 153 YEGPVYGLGTKSVGGILAVLYVLTMSKHNFVPLLAISMCLSVEAIAIC 10
           +E P+  L  K V  +  +L  L ++     PL+ I+  +  EA+A C
Sbjct: 246 FENPLILLSEKKVSAVQDILPSLELAAQQRRPLVIIAEDVDGEALAAC 293


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 336 FTFG*QWPTETVTIPPNRSRYLLPSLSYNHCMCP 235
           +T+  +W  E  + P     Y++    YN  +CP
Sbjct: 108 YTYNSRWKIEIPSYPVREIPYVVADTPYNKLLCP 141


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 257 DNDGKRYLDLFGGIVTVSVGH 319
           D  G  +LDL GG+  V+VG+
Sbjct: 85  DEKGTEHLDLIGGVGVVTVGN 105


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 207 PIRSRCFSPRGTCSGYTTTT 266
           P R+ C+SP G    Y T T
Sbjct: 36  PARNACYSPNGKLFAYATAT 55


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 119 DFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 220
           D  P P   PS Q    +    MPP +T  Y +P
Sbjct: 454 DGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQP 487


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 340 CIYFRMTMAHGDGDDSTEQIQ 278
           C+YF  T+ + +GDD    IQ
Sbjct: 48  CVYFYHTLENQEGDDERPLIQ 68


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 164 LLVGTKVPCTVWARNPSAAFWPC 96
           + VGT     +WA  P ++ W C
Sbjct: 511 ITVGTDATLRIWALLPGSSAWKC 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,249
Number of Sequences: 5004
Number of extensions: 51211
Number of successful extensions: 138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)