Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32184
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.5  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   4.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   5.9  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   5.9  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   5.9  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    25   7.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.8  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 12  MMKRNNKLHRITSQQSGLLYASEAGNAGVF 101
           +  +NN L++ T  Q G+LY S + N  ++
Sbjct: 795 VQSKNNFLNKCTPLQKGMLYESFSNNGNLY 824


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 267 VLRHNYVLNFYLFKVCGHSVENNSKTLTLVYYTT 368
           VLRH  +L     + CG SV+ N+    L + TT
Sbjct: 47  VLRHWKILFSLFMQTCGDSVQGNAAFSILNFMTT 80


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +3

Query: 297  YLFKVCGHSVENNSKTLTLVYYTTPRINVTEFGKSKNIITSQLKRCYTKETWTNL 461
            + +++  H +     T+    Y   RI V   G+ + ++T ++KR + ++ W  L
Sbjct: 936  WTYQIDYHGLAAIIYTMLFGQYIETRIEVIN-GQRRQVLTQRMKRYWNQDLWHRL 989


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +3

Query: 480 LMCRFSKILHASDVQICRRTTYKIAQLRHAVSGERTNLCIKIIIDFSTLRHVQTL 644
           L   F  I HA+  + C   T KI +    ++    +LC++ I     L     L
Sbjct: 5   LFLYFDAIRHANQRRWCHECTIKIFRRSFDIARHTVHLCVRKIFSLHPLTETDFL 59


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/63 (20%), Positives = 27/63 (42%)
 Frame = +3

Query: 294 FYLFKVCGHSVENNSKTLTLVYYTTPRINVTEFGKSKNIITSQLKRCYTKETWTNLTCPF 473
           + L+ +   ++       +++YY   ++     G S ++ T  L + YT     N+    
Sbjct: 612 YLLYDIWQRTMPEEGTLASVMYYVAEQVAFFSLGNSNSLATVDLSQAYTGLDSYNIFAVG 671

Query: 474 ILL 482
           ILL
Sbjct: 672 ILL 674


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 157 FWQRPYRKVLWD 192
           FWQ+P RK  WD
Sbjct: 247 FWQKPARKCWWD 258


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/64 (21%), Positives = 25/64 (39%)
 Frame = -2

Query: 682  KNNLIFFCKLTPSSVCTWRSVEKSIIILIHKLVRSPDTACRSCAILYVVRRQICTSLACR 503
            K ++ +  +  PS+  TW  +   +    H + R   T       L++V   IC      
Sbjct: 1019 KESVTWIKEAPPSNFLTWEIIISDLTRTYHLIPRGSSTVSIILFSLFLVSPLICALATML 1078

Query: 502  IFEK 491
             F+K
Sbjct: 1079 AFQK 1082


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 457 FVQVSFV*HL---LSCEVIIFFDLPNSVTLILGVV 362
           F+Q SF+      + CE+II+F + N V+ + G+V
Sbjct: 17  FIQKSFLGFCSLRVGCEIIIWFAIINKVSGLYGIV 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,039
Number of Sequences: 5004
Number of extensions: 63371
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)