Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32184
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0935 + 20918617-20919299,20919328-20919627,20919680-209198...    31   0.86 
04_04_0489 + 25600543-25601368,25601441-25602282                       30   1.5  
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272...    28   6.1  
02_03_0106 + 15292869-15296138                                         28   8.0  

>04_03_0935 +
           20918617-20919299,20919328-20919627,20919680-20919836,
           20921338-20921397,20921554-20921670
          Length = 438

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +3

Query: 189 GSRR*TEGHAPHPNCSTYFVPVIRTYVLRH 278
           G RR T GHA HP+  T FV V +T+  RH
Sbjct: 116 GGRRIT-GHALHPDGRTIFVSVEKTHARRH 144


>04_04_0489 + 25600543-25601368,25601441-25602282
          Length = 555

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 77  RGWECGCVLSLPKSSSLPWTDLLELPASGSVHIER 181
           R W CG +       +LPW  + + PAS   HIER
Sbjct: 403 RDWLCGGISEYDYKLALPWKKVFD-PASWDEHIER 436


>01_06_1795 -
           39925019-39926029,39926265-39926408,39927200-39927277,
           39927722-39927838,39927925-39927981,39928492-39928623,
           39928725-39928922,39929364-39929474,39929570-39929785,
           39929879-39930064,39930590-39931192
          Length = 950

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 496 RRFCMPVMCKSVVEQHTKSHSCDMQCRVSELICVL 600
           R+  M   C+S++++ + SHS D+Q R  EL  +L
Sbjct: 559 RKIDMLPECQSLIDELSASHSTDLQQRAYELQALL 593


>02_03_0106 + 15292869-15296138
          Length = 1089

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +2

Query: 74  ERGWECGCVLSLPKSSSLPWTDLLELPASGSVHIERCCGIP 196
           E GW   C  SLP+ SS    +L  L   G   +ERC G P
Sbjct: 336 ENGWALLCRQSLPECSS---EELASLKDVGIKIVERCDGHP 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,843
Number of Sequences: 37544
Number of extensions: 396343
Number of successful extensions: 1086
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)